A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

C

C - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

Ca - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

CaCO3 - Static variable in class gov.nist.microanalysis.EPQLibrary.MaterialFactory

calculateEnergyLoss(double, double) - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS.Region

calculateEnergyLoss - Calculate the amount of kinetic energy lost when an electron of the specified kinetic energy (kE) traverses a distance (len) in this Region.

canCreate(Element) - Static method in class gov.nist.microanalysis.EPQLibrary.MaterialFactory

candidatePoint(double, double, double) - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS.Electron

candidatePoint - Computes the location of the next point assuming that the electron's current trajectory is deviated by angles alpha and beta and the step length is dS.

CarbonLayer - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

CarbonLayer - Estimated thickness (in nanometers) of the carbon layer coating the surface of the sample.

Casnati82 - Static variable in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection

Casnati82 - E Casnati, A Tartari & C Baraldi, J Phys B15 (1982) 155 as quoted by C Powell in Ultramicroscopy 28 (1989) 24-31 "(Casnati's equation) was found to fit cross-section data to typically better than +-10% over the range 1<=Uk<=20 and 6<=Z<=79." Note: This result is for K shell.

caveat(Composition, double) - Method in class gov.nist.microanalysis.EPQLibrary.ElectronRange

caveat(Element, double) - Method in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

caveat - Specifies the caveats for the specific elemant and x-ray energy.

caveat(Composition, double) - Method in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

caveat - Determines any relevant caveats based on the caveats for the constituent elements.

caveat(Composition) - Method in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

caveat(Element) - Method in class gov.nist.microanalysis.EPQLibrary.MeanIonizationPotential

caveat(Composition) - Method in class gov.nist.microanalysis.EPQLibrary.MeanIonizationPotential

CaveatBase - Class in gov.nist.microanalysis.EPQLibrary

Provides a standardized base set of static items for use in caveats - a mechanism for identifying an algorithms limitations.

CaveatBase() - Constructor for class gov.nist.microanalysis.EPQLibrary.CaveatBase

Cd - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

Ce - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

centigrade(double) - Static method in class gov.nist.microanalysis.EPQLibrary.FromSI

centigrade - Converts from kelvin to centigrade

centigrade(double) - Static method in class gov.nist.microanalysis.EPQLibrary.ToSI

centigrade - Converts from centigrade to kelvin

Cf - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

CFiori - Static variable in class gov.nist.microanalysis.EPQLibrary.Reference

ChamberRadius - Static variable in class gov.nist.microanalysis.NISTMonte.MonteCarloSS

channelForEnergy(ISpectrumData, double) - Static method in class gov.nist.microanalysis.EPQLibrary.SpectrumUtils

channelForEnergy - Returns the index of the channel which contains the specified channel.

Chantler2005 - Static variable in class gov.nist.microanalysis.EPQLibrary.EdgeEnergy

Chantler2005 - A set of edge energies from "Chantler, C.T., Olsen, K., Dragoset, R.A., Kishore, A.R., Kotochigova, S.A., and Zucker, D.S.

Chantler2005 - Static variable in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

Chantler2005 - Chandler2005 seems to be a very capable set of MAC computed from theory.

Chantler2005 - Static variable in class gov.nist.microanalysis.EPQLibrary.TransitionEnergy

Chandler2005 - Computes the transition energies from the edge energies provided by "Chantler, C.T., Olsen, K., Dragoset, R.A., Kishore, A.R., Kotochigova, S.A., and Zucker, D.S.

CharacteristicXRayGeneration - Class in gov.nist.microanalysis.EPQLibrary

CharacteristicXRayGeneration computes the (fractional) quantity of x-rays of the specified transition generated by an electron of the specified energy in the specified density of the appropriate atoms.

CharacteristicXRayGeneration(String, String) - Constructor for class gov.nist.microanalysis.EPQLibrary.CharacteristicXRayGeneration

Constructs a CharacteristicXRayGeneration algorithm instance

CharacterizationOfParticles - Static variable in class gov.nist.microanalysis.EPQLibrary.Reference

Cl - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

ClassicalElectronRadius - Static variable in class gov.nist.microanalysis.EPQLibrary.PhysicalConstants

ClassicalElectronRadius - The classical electron radius in meters

clear() - Method in class gov.nist.microanalysis.EPQLibrary.Composition

clear - Clear all consistuent elements.

clear() - Method in class gov.nist.microanalysis.EPQLibrary.EDSDetector

clear - Clear the spectral data.

clear() - Method in class gov.nist.microanalysis.EPQLibrary.MACCache

clear() - Method in class gov.nist.microanalysis.EPQLibrary.Material

clear - Clear all consistuent elements.

clear() - Method in class gov.nist.microanalysis.EPQLibrary.Microcalorimeter

clear - Clear the spectral data.

clear() - Method in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

clear - Clears the defintion of all properties.

clear(SpectrumProperties.PropertyId[]) - Method in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

clear - Clear the specified properties identified by this list of PropertyId objects from this SpectrumProperties.

clear() - Method in class gov.nist.microanalysis.EPQLibrary.XRayEvents

clear - Clear all x-ray events from this container.

clear() - Method in class gov.nist.microanalysis.NISTMonte.XRayAccumulator

clear - Reset the accumulator to zero.

clear() - Method in class gov.nist.microanalysis.Utility.LinearRegression

clear - Clear the current accumulation and start a new fit.

clearAllBut(SpectrumProperties.PropertyId[]) - Method in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

clearAllBut - Clears all the SpectrumProperties.PropertyId objects in the SpectrumProperties object except the ones listed.

clearChannels() - Method in class gov.nist.microanalysis.EPQLibrary.EditableSpectrum

clearChannels - Set all channel data to 0.0

clearGlobalOverride() - Static method in class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

clearGlobalOverride - Clear the global strategy override restoring each algorithm to use its default algorithms.

clearSubRegions() - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS.Region

clearSubRegions - Clear all the fully contained Regions within this Region.

ClientName - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

ClientName - The name of the client for whom the analysis was performed.

ClientNumber - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

ClientNumber - A field (sometimes a number) provided by a client that the client uses to identify the sample.

clone() - Method in class gov.nist.microanalysis.EPQLibrary.AtomicShell

clone() - Method in class gov.nist.microanalysis.EPQLibrary.Composition

clone() - Method in class gov.nist.microanalysis.EPQLibrary.Gas

clone() - Method in class gov.nist.microanalysis.EPQLibrary.Material

clone() - Method in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

clone() - Method in class gov.nist.microanalysis.EPQLibrary.Strategy

clone() - Method in class gov.nist.microanalysis.EPQLibrary.XRayTransition

clone() - Method in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

clone(Object) - Method in class gov.nist.microanalysis.NISTMonte.CylindricalShape

close() - Method in class gov.nist.microanalysis.EPQTools.EndianRandomAccessFile

like RandomAcessFile.close

close() - Method in class gov.nist.microanalysis.EPQTools.LEDataInputStream

close() - Method in class gov.nist.microanalysis.EPQTools.LEDataOutputStream

close() - Method in class gov.nist.microanalysis.EPQTools.RippleFile

close - Closes the associated disk files.

close() - Method in class gov.nist.microanalysis.EPQTools.WriteRaw

Deprecated. close - Closes the underlying file.

CLyman - Static variable in class gov.nist.microanalysis.EPQLibrary.Reference

Cm - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

CM - Static variable in class gov.nist.microanalysis.EPQLibrary.FromSI

m -> cm

cm(double) - Static method in class gov.nist.microanalysis.EPQLibrary.FromSI

cm - Converts from meters to cm

CM - Static variable in class gov.nist.microanalysis.EPQLibrary.ToSI

cm -> m

cm(double) - Static method in class gov.nist.microanalysis.EPQLibrary.ToSI

cm - Converts from cm to meters

cmSqrPerg(double) - Static method in class gov.nist.microanalysis.EPQLibrary.FromSI

cmSqrPerg - Converts mass absorption coefficients from SI.

cmSqrPerg(double) - Static method in class gov.nist.microanalysis.EPQLibrary.ToSI

cmSqrPerg - Converts mass absorption coefficients to SI.

Co - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

COLLECTION - Static variable in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

An undefined collection of transitions associated with a specific element

CollectionAngle - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

CollectionAngle - Collection semi-angle of scattered beam in mR

COMBINED - Static variable in class gov.nist.microanalysis.EPQLibrary.NISTXRayTransitionDB

ComboBoxCellEditor - Class in gov.nist.microanalysis.Utility

ComboBoxCellEditor(JComboBox) - Constructor for class gov.nist.microanalysis.Utility.ComboBoxCellEditor

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

compareTo - Sort by name

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.AtomicShell

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.BaseSpectrum

compareTo - Keeping spectra in the order in which they were constructed.

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.Composition

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.Element

compareTo - Implements the Comparable interface.

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.Material

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties.PropertyId

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.XRayTransition

compareTo - Orders by atomic number then by destination shell and finally by source shell.

compareTo(Object) - Method in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

compareTo(Object) - Method in class gov.nist.microanalysis.EPQTools.KLMLine

compareTo - Allows to KLM lines to be ordered.

Composition - Class in gov.nist.microanalysis.EPQLibrary

Composition - A class implementing a mechanism for describing the elemental composition of a material.

Composition() - Constructor for class gov.nist.microanalysis.EPQLibrary.Composition

Material - Constructs a Material that is equivalent to a pure vacuum.

Composition(Element[], double[]) - Constructor for class gov.nist.microanalysis.EPQLibrary.Composition

Constructs a Composition with the specified elements in the specified weight fractions.

Composition(Element[], double[], String) - Constructor for class gov.nist.microanalysis.EPQLibrary.Composition

Constructs a Composition with the specified weight fractions.

Composition - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

Composition - A string describing the composition (as implemented by Composition.toComposition and Composition.parseCompositon) The Composition string should reflect the composition of the sample as determined by an reliable independent method such as wet chemistry.

CompositionType - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

CompositionType - This property type is most naturally represented as an Composition object.

compute(Element, double) - Method in class gov.nist.microanalysis.EPQLibrary.BetheElectronEnergyLoss

compute - Computes dE/ds in Joules/meter per kg/meter^3

compute(XRayTransition, double, double) - Method in class gov.nist.microanalysis.EPQLibrary.CharacteristicXRayGeneration

compute(AtomicShell) - Method in class gov.nist.microanalysis.EPQLibrary.EdgeEnergy

getEdgeEnergy - Returns the edge energy associated with the specified atomic shell (in Joules)

compute(XRayTransition) - Method in class gov.nist.microanalysis.EPQLibrary.EdgeEnergy

getEdgeEnergy - Returns the edge energy (in Joules) associated with the specified tranition.

compute(Composition, double) - Method in class gov.nist.microanalysis.EPQLibrary.ElectronRange

Computes the electron range using the current algorithm.

compute(Composition, AtomicShell, double) - Method in class gov.nist.microanalysis.EPQLibrary.ElectronRange

Computes the electron range for an electron of incident energy e0 until it drops below the edge energy for the specified shell in the specified material.

compute(AtomicShell) - Method in class gov.nist.microanalysis.EPQLibrary.FluorescenceYield

compute - Computes the fluorescence yield for transitions into the specific shell, K, LI, LII, LIII, MI, ...

compute(Element, double) - Method in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

compute - Each different version of the algorithm should implement this method.

compute(Element, XRayTransition) - Method in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

compute - Computes the mass absorption coefficient for the specified transition.

compute(Composition, double) - Method in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

compute - Compute the mass absorption coefficient for an x-ray of the specified energy in the specified material.

compute(Composition, XRayTransition) - Method in class gov.nist.microanalysis.EPQLibrary.MassAbsorptionCoefficient

compute - Compute the mass absorption coefficient for the specified x-ray in the specified material.

compute(Element) - Method in class gov.nist.microanalysis.EPQLibrary.MeanIonizationPotential

eval - Each different version of the algorithm should implement this method.

compute(XRayTransition) - Method in class gov.nist.microanalysis.EPQLibrary.TransitionEnergy

compute - Compute the transition energy for the specified transition.

computeDetectorPosition(double, double) - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS

computeDetectorPosition - Computes the coordinates of a detector placed at the specified elevation angle at an azimuthal angle of 0.

computeExponent(AtomicShell) - Static method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection.Pouchou86ICX

computeExponent(AtomicShell) - Static method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection.Proza96ICX

computeFamily(AtomicShell, double) - Method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection

computeFamily(AtomicShell, double) - Method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection.Pouchou86ICX

computeFamily(AtomicShell, double) - Method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection.Proza96ICX

computeLn(Composition) - Method in class gov.nist.microanalysis.EPQLibrary.MeanIonizationPotential

computeLn - Computes the mean ionization potential for a Composition using the rule based on the ln(J_i) where J_i is the elemental MeanIonizationPotential.

computeMean(AtomicShell) - Method in class gov.nist.microanalysis.EPQLibrary.FluorescenceYield

computeMean - Computes the mean fluorescence yield for transitions into the family (K, L or M) in which this shell is a member.

computeShell(AtomicShell, double) - Method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection

Computes the ionization cross section for an energetic electron on the specified element/shell.

computeShell(AtomicShell, double) - Method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection.Pouchou86ICX

computeShell(AtomicShell, double) - Method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection.Proza96ICX

computeX(double) - Method in class gov.nist.microanalysis.Utility.LinearRegression

computeX - Computes the x such that y(x) = x*getSlope() + getIntercept();

computeY(double) - Method in class gov.nist.microanalysis.Utility.LinearRegression

computeY - Computes Y(x) = x*getSlope() + getIntercept();

contains(XRayTransition) - Method in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

contains - Does this XRayTransitionSet contain the specified XRayTransition

contains(double[]) - Method in class gov.nist.microanalysis.NISTMonte.CylindricalShape

contains(double[]) - Method in interface gov.nist.microanalysis.NISTMonte.MonteCarloSS.Shape

contains - Is the specified point inside the item represented by this Shape interface? A point on the interface between two Shapes is considered to be inside both Shapes.

contains(double[]) - Method in class gov.nist.microanalysis.NISTMonte.MultiPlaneShape

contains - See MonteCarloSS.Shape.contains

contains(double[]) - Method in class gov.nist.microanalysis.NISTMonte.ShapeDifference

contains - See MonteCarloSS.contains

contains(double[]) - Method in class gov.nist.microanalysis.NISTMonte.SimpleBlock

contains(double[]) - Method in class gov.nist.microanalysis.NISTMonte.Sphere

contains(double[]) - Method in class gov.nist.microanalysis.NISTMonte.SumShape

contains - See MonteCarloSS.Shape.contains

containsElement(Element) - Method in class gov.nist.microanalysis.EPQLibrary.Composition

containsElement - Determines whether the Material contains the specified Element.

Continuum - Static variable in class gov.nist.microanalysis.EPQLibrary.AtomicShell

ConvergenceAngle - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

ConvergenceAngle - Convergence semi-angle of incident beam in milliRadians [RN] (EMSA)

counts(int) - Method in class gov.nist.microanalysis.Utility.Histogram

counts - Returns the number of counts in the specified bin.

Cr - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

createAir(double, double) - Static method in class gov.nist.microanalysis.EPQLibrary.GasMixture

createAir - Creates a gas with nominally the same composition as the air we breath.

createBlock(double[], double[], double, double, double) - Static method in class gov.nist.microanalysis.NISTMonte.MultiPlaneShape

createBlock - Create a block of dimensions specified in dims, centered at point then rotated by the euler angles phi, theta, psi.

createByDestinationShell(AtomicShell) - Static method in class gov.nist.microanalysis.EPQLibrary.XRayTransition

createByDestinationShell - Creates a list of all x-ray transition lines that may occur when the destination shell is empty.

createElectron() - Method in interface gov.nist.microanalysis.NISTMonte.MonteCarloSS.ElectronGun

createElectron - Called by MonteCarloSS at the beginning of each trajectory to get a fresh Electron.

createElectron() - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS.GaussianBeam

createFilm(double[], double[], double) - Static method in class gov.nist.microanalysis.NISTMonte.MultiPlaneShape

createFilm - Construct a MCSS_MultiPlane object corresponding to a film.

createMaterial(String) - Static method in class gov.nist.microanalysis.EPQLibrary.MaterialFactory

createMaterial - Creates the material based on the type identified as one of the integer constants listed above.

createMaterial(Frame) - Static method in class gov.nist.microanalysis.EPQTools.MaterialsCreator

createMaterial(Dialog) - Static method in class gov.nist.microanalysis.EPQTools.MaterialsCreator

createMaterial() - Static method in class gov.nist.microanalysis.EPQTools.MaterialsCreator

createMaterial(Frame, Composition) - Static method in class gov.nist.microanalysis.EPQTools.MaterialsCreator

createMaterial(Dialog, Composition) - Static method in class gov.nist.microanalysis.EPQTools.MaterialsCreator

createNamid(double[], int, double, double) - Static method in class gov.nist.microanalysis.NISTMonte.MultiPlaneShape

Create a Tetrahedron (n=3), Pyramid (n=4), ..., etc with the specified center, number of sides, height and base dimension.

createPureElement(Element) - Static method in class gov.nist.microanalysis.EPQLibrary.MaterialFactory

createPureElement - Create a simple material based on a pure element and a nominal density for a typical solid manifestation of this element.

createRegion() - Method in class gov.nist.microanalysis.NISTMonte.PorousBlock

createRegion - Create a region based on the current set of parameters.

createSubstrate(double[], double[]) - Static method in class gov.nist.microanalysis.NISTMonte.MultiPlaneShape

createSubstrate - Construct a MCSS_MultiPlane object corresponding to an infinitely thick layer.

createWindow(String) - Static method in class gov.nist.microanalysis.EPQLibrary.XRayWindowFactory

cross(double[], double[]) - Static method in class gov.nist.microanalysis.Utility.Math2

cross - Computes the cross product of two three-vectors a and b

Cs - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

CSVReader - Class in gov.nist.microanalysis.EPQLibrary

A class for reading in *.csv files

CSVReader(String, boolean) - Constructor for class gov.nist.microanalysis.EPQLibrary.CSVReader

Cu - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

CYLINDER_WALL - Static variable in class gov.nist.microanalysis.NISTMonte.CylindricalShape

CylindricalShape - Class in gov.nist.microanalysis.NISTMonte

A MonteCarloSS.Shape representing a cylindrical shape of arbitrary axis and radius.

CylindricalShape(double[], double[], double) - Constructor for class gov.nist.microanalysis.NISTMonte.CylindricalShape

MCSS_CylindricalShape - Create a cylindrical shape from the end points specified with the specified radius.

CylindricalShapeTest - Class in gov.nist.microanalysis.EPQTests

Tests the CylindricalShape class.

CylindricalShapeTest(String) - Constructor for class gov.nist.microanalysis.EPQTests.CylindricalShapeTest

CzyzewskiMottCrossSection - Class in gov.nist.microanalysis.EPQLibrary

A simple class for loading tables of Mott cross-section values and then interpolating between them to return cross-sections.

CzyzewskiMottCrossSection(Element) - Constructor for class gov.nist.microanalysis.EPQLibrary.CzyzewskiMottCrossSection

MottCrossSection - Creates an object representing the Mott cross section for the specified element.

CzyzewskiMottScatteringAngle - Class in gov.nist.microanalysis.EPQLibrary

A class to compute a randomized scattering angle for an electron with a specified energy.

CzyzewskiMottScatteringAngle(Element) - Constructor for class gov.nist.microanalysis.EPQLibrary.CzyzewskiMottScatteringAngle

MottScatteringAngle - Creates a MottScatteringAngle object for the specified element.