A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

absolute() - Method in class gov.nist.microanalysis.EPQLibrary.IonizationCrossSection

absolute - Does this implementation of the IonizationCrossSection return an absolute cross section or simply a proportional one?

ABSOLUTE - Static variable in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

Mode for getWeighiestTransitions

absorption(double) - Method in class gov.nist.microanalysis.EPQLibrary.XRayWindow

absorption - Computest the fraction of incident photons of the specified energy that will be absorbed by the window.

Ac - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

AcquisitionTime - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

AcquisitionTime - The time at which the spectrum was aquired.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.EPQLibrary.EDSDetector

actionPerformed - Implements actionPerformed for the ActionListener abstract class.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.EPQLibrary.Microcalorimeter

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.AnnularDetector

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.BackscatterStats

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.BremsstrahlungEventListener

actionPerformed - Handles MonteCarloSS.XRayEvents by caching some useful information then firing event listeners.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.EmissionImage

actionPerformed - Implements actionPerformed for the ActionListener interface.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.PhiRhoStats

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.ScatterStats

actionPerformed - Collect the necessary statistics

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.SecondaryListener

At each scattering event decide whether to create a secondary electron.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.TrajectoryImage

actionPerformed - Implements actionPerformed for the ActionListener interface.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.TrajectoryVRML

actionPerformed - Implements actionPerformed for the ActionListener interface.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.XRayAccumulator

Invoked when an action occurs.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.NISTMonte.XRayEventListener

actionPerformed - Handles x-ray events by computing the amount of characteristic x-rays generated.

actionPerformed(ActionEvent) - Method in class gov.nist.microanalysis.Utility.ComboBoxCellEditor

ActiveLayer - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

ActiveLayer - Thickness of the detector active layer in micrometers.

add(ISpectrumData, double) - Method in class gov.nist.microanalysis.EPQLibrary.SpectrumMath

add - Add k times counts in the specified spectrum into the sum spectrum.

add(XRayTransition) - Method in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

add(XRayTransitionSet) - Method in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

combine - Add the specified XRayTransitionSet into this XRayTransitionSet.

add(double) - Method in class gov.nist.microanalysis.Utility.DescriptiveStatistics

Add a number to the accumulated statistics.

add(double) - Method in class gov.nist.microanalysis.Utility.Histogram

add - Add the specified value to the histogram.

add(double[]) - Method in class gov.nist.microanalysis.Utility.Histogram

add - Add the specified array of values to the histogram.

addActionListener(ActionListener) - Method in class gov.nist.microanalysis.NISTMonte.BremsstrahlungEventListener

addActionListener - Objects that are interested in receiving notification whenever an event occurs should register an ActionListener using this method.

addActionListener(ActionListener) - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS

addActionListener - Register a class that implements the ActionListener abstract class.

addActionListener(ActionListener) - Method in class gov.nist.microanalysis.NISTMonte.XRayEventListener

addActionListener - Objects that are interested in receiving notification whenever an x-ray event occurs should register an ActionListener using this method.

addAlgorithm(Class, AlgorithmClass) - Method in class gov.nist.microanalysis.EPQLibrary.Strategy

Specify an implentation of an AlgorithmClass-derived abstract base class.

addAll(SpectrumProperties) - Method in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

addAll - All all the properties from props into this SpectrumProperties object overwriting duplicate elements in this.

addData(double[], double[]) - Method in class gov.nist.microanalysis.Utility.LinearRegression

addData - Add two equal lengthed arrays of data points to the current accumulation.

addDatum(double, double) - Method in class gov.nist.microanalysis.Utility.LinearRegression

addDatum - Add a single data point

addDefaultAlgorithm(Class, AlgorithmClass) - Method in class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

addDefaultAlgorithm - Specify a default algorithm.

addDefaultImages(XRayEventListener, int, double, double) - Static method in class gov.nist.microanalysis.NISTMonte.EmissionImage

addDefaultImages - Add MCSS_Image listeners to the default transitions

addElement(int, double) - Method in class gov.nist.microanalysis.EPQLibrary.Composition

addElement - Add a specified weight fraction of the specified element to the Material.

addElement(Element, double) - Method in class gov.nist.microanalysis.EPQLibrary.Composition

addElement - Add a specified weight fraction of the specified element to the Material.

addElementByStoiciometry(Element, double) - Method in class gov.nist.microanalysis.EPQLibrary.Composition

addElementUsingMoleFractions - Add a specified mole fraction of the specified element to the material

addEvent(double, double) - Method in class gov.nist.microanalysis.EPQLibrary.EDSDetector

addEvent - Add x-ray events of the specified energy and intensity.

addEvent(int, double) - Method in class gov.nist.microanalysis.EPQLibrary.EDSDetector

addEvent - Add x-ray events of the specified energy and intensity.

addEvent(double, double) - Method in class gov.nist.microanalysis.EPQLibrary.Microcalorimeter

addEvent - Add x-ray events of the specified energy and intensity.

addEvent(double, double, double[]) - Method in class gov.nist.microanalysis.EPQLibrary.XRayEvents

addEvent- Add a new x-ray event of the specified energy, amplitude originating from the specified position.

addIce(double) - Method in class gov.nist.microanalysis.EPQLibrary.XRayWindow

addIce - Add a layer of ice of the specified thickness to the window.

addLayer(Material, double) - Method in class gov.nist.microanalysis.EPQLibrary.XRayWindow

addLayer - Add a new material layer to the window.

addMAC(Material, double, double) - Method in class gov.nist.microanalysis.EPQLibrary.MACCache

addMAC - Add a MAC to the cache.

addMaterial(Material) - Method in class gov.nist.microanalysis.EPQLibrary.MaterialFactory

addMaterial - Add a material to the current library.

addNoiseToSpectrum(ISpectrumData, double) - Static method in class gov.nist.microanalysis.EPQLibrary.SpectrumUtils

Creates a new spectrum from the specified source spectrum by adding Poissonian simulated counting statistic noise.

addPlane(double[], double[]) - Method in class gov.nist.microanalysis.NISTMonte.MultiPlaneShape

addPlane - Add a new bounding plane to the Shape defined by this MCSS_MultiPlane.

addSubRegion(MonteCarloSS.Region, Material, MonteCarloSS.Shape) - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS

addSubRegion - A method to simplify creating new sub-Regions and adding them to a parent Region.

addView(String, double[], double[]) - Method in class gov.nist.microanalysis.NISTMonte.TrajectoryVRML

addView - A mechanism for adding viewports into the VRML output file.

addWindowClosingListener(ActionListener) - Method in class gov.nist.microanalysis.EPQTools.MaterialsCreator

addWindowClosingListener - Adds a window closing listener.

AFA_DAvg - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

AFA_DAvg - The average particle diameter as measured by ASPEX AFA.

Ag - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

Al - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

Al2O3 - Static variable in class gov.nist.microanalysis.EPQLibrary.MaterialFactory

AlgorithmClass - Class in gov.nist.microanalysis.EPQLibrary

A simple class that implements various common properties of classes that implement algorithms.

AlgorithmClass(String, String, Reference) - Constructor for class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

AlgorithmClass(String, String, String) - Constructor for class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

ALL_TRANSITIONS - Static variable in class gov.nist.microanalysis.EPQLibrary.XRayTransition

allAlgorithmNames() - Static method in class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

allAlgorithmNames - Gets an array of String containing a description of all algorithms as returned by toString().

allAlgorithms() - Static method in class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

allAlgorithms - An unmodifiable list of all available algorithms of all various different classes.

allBasicTransitionSets - Static variable in class gov.nist.microanalysis.EPQLibrary.XRayTransitionSet

allElectronsComplete() - Method in class gov.nist.microanalysis.NISTMonte.MonteCarloSS

Have all the electron trajectories resulting from the most recent incident electron completed there trajectories? If one trajectory has finished and another Electron exists on the Electron stack, this method will remove an Electron from the stack and reinitiate tracking it.

AllElements() - Static method in class gov.nist.microanalysis.EPQLibrary.Element

AllElements - A immutable list of all elements (H->Uub).

AlumimumWindow - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

AlumimumWindow - Thickness of the aluminum window in nanometers.

AluminumLayer - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

AluminumLayerThickness - The thickness (in nanometers) of the aluminum layer coating the surface of the detector.

Am - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

AMU - Static variable in class gov.nist.microanalysis.EPQLibrary.FromSI

kg -> AMU

AMU(double) - Static method in class gov.nist.microanalysis.EPQLibrary.FromSI

AMU - Converts a mass in kilograms into AMU.

AMU - Static variable in class gov.nist.microanalysis.EPQLibrary.ToSI

AMU -> kg

AMU(double) - Static method in class gov.nist.microanalysis.EPQLibrary.ToSI

AMU - Converts a mass in AMU into kilograms.

Analyst - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

Analyst - The instrument operator who collected the spectrum.

angleBetween(double[], double[]) - Static method in class gov.nist.microanalysis.Utility.Math2

angleBetween - Returns the angle between the vector a and vector b in radians.

ANGSTROM - Static variable in class gov.nist.microanalysis.EPQLibrary.FromSI

m -> angstrom

angstrom(double) - Static method in class gov.nist.microanalysis.EPQLibrary.FromSI

angstrom - Converts from meters to angstroms.

ANGSTROM - Static variable in class gov.nist.microanalysis.EPQLibrary.ToSI

angstrom -> m

angstrom(double) - Static method in class gov.nist.microanalysis.EPQLibrary.ToSI

angstrom - Converts from angstroms to meters.

angularDistribution(double, double) - Static method in class gov.nist.microanalysis.EPQLibrary.Bremsstrahlung

angularDistribution - The Lorentz transformed angular distribution for Bremsstrahlung radiation from an energetic electron in the Coulombic field of an atom.

AnnularDetector - Class in gov.nist.microanalysis.NISTMonte

A software implementation of an annular detector such as might be found on an idealized AEM.

AnnularDetector(double, int, double[], double[]) - Constructor for class gov.nist.microanalysis.NISTMonte.AnnularDetector

AnnularDetector - Construct an annular detector of the specified total radius which is subdivided into nRing equal width rings detectors.

append(String, String) - Static method in class gov.nist.microanalysis.EPQLibrary.CaveatBase

appendCaveat - Append a new caveat to a list of existing caveats.

append(Reader) - Method in class gov.nist.microanalysis.EPQLibrary.MaterialFactory

append - Append the materials in the XML library specified in the Reader R to the current library.

apply(Strategy) - Method in class gov.nist.microanalysis.EPQLibrary.Strategy

apply - For those Class objects in this Stragegy, assign the Class-to-AlgorithmClass mappings in the argument Strategy to this Strategy.

applyGlobalOverride(Strategy) - Static method in class gov.nist.microanalysis.EPQLibrary.AlgorithmClass

applyGlobalOverride - Apply the specified Strategy as a gloabal overrride for all AlgorithmClass objects.

Ar - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

areCompatible(ISpectrumData, ISpectrumData) - Static method in class gov.nist.microanalysis.EPQLibrary.SpectrumUtils

areCompatible - Are the channel count, channel width and zero offset on these two spectra equal?

ArrayType - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

ArrayType - This property is most naturally represented as an double[]

As - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

ASPEX_BeamX - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

ASPEX_BeamX - The location of the beam on the image during the EDS acquisition

ASPEX_BeamY - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

ASPEX_BeamY - The location of the beam on the image during the EDS acquisition

assignColor(Material) - Method in class gov.nist.microanalysis.NISTMonte.TrajectoryImage

assignColor - Assigns a color to a Material.

At - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

atomicNumberForName(String) - Static method in class gov.nist.microanalysis.EPQLibrary.Element

atomicNumberForName - Get the atomic number for the named element.

AtomicShell - Class in gov.nist.microanalysis.EPQLibrary

A class containing methods that relate to atomic shells.

AtomicShell(Element, int) - Constructor for class gov.nist.microanalysis.EPQLibrary.AtomicShell

AtomicShell - Constructs an AtomicShell object from a atomic number and a shell.

AtomicShellTest - Class in gov.nist.microanalysis.EPQTests

Tests the AtomicShell class.

AtomicShellTest(String) - Constructor for class gov.nist.microanalysis.EPQTests.AtomicShellTest

atomsPerCubicMeter(Element) - Method in class gov.nist.microanalysis.EPQLibrary.Material

atomsPerCubicMeter - Computes the numbers of atoms per cubic centimeter for the specified element based on the composition and density of this Material.

Au - Static variable in class gov.nist.microanalysis.EPQLibrary.Element

AutoComplete - Class in gov.nist.microanalysis.Utility

AutoComplete provides a mechanism to modify the standard JComboBox to implement auto-completion.

AutoComplete(JComboBox) - Constructor for class gov.nist.microanalysis.Utility.AutoComplete

Constructs a AutoComplete.

AvagadroNumber - Static variable in class gov.nist.microanalysis.EPQLibrary.PhysicalConstants

AvagadroNumber - Avagadro's number (As in "I have ...")

average() - Method in class gov.nist.microanalysis.Utility.DescriptiveStatistics

The average value of the values added to this object using the add method.

avgCounts(ISpectrumData) - Static method in class gov.nist.microanalysis.EPQLibrary.SpectrumUtils

avgCounts - Returns the average number of counts over all channels

avgEnergyForChannel(ISpectrumData, int) - Static method in class gov.nist.microanalysis.EPQLibrary.SpectrumUtils

Azimuth - Static variable in class gov.nist.microanalysis.EPQLibrary.SpectrumProperties

Azimuth - The azimuthal angle of the detector (from x-axis counterclockwise)

azimuthalAngle(int) - Method in class gov.nist.microanalysis.NISTMonte.BackscatterStats

azimuthalAngle - Maps bin number in the azimuthal angle into angles in radians.

azimuthalHistogram() - Method in class gov.nist.microanalysis.NISTMonte.BackscatterStats

azimuthalHistogram - Returns a histogram of the backscattered and forward scattered electrons as a function of the azimuthal angle.