D2S441

Other Names

Chromosomal Location

GenBank Accession

D2S1778
CHLC.GATA72A05

UniSTS:71306

2p14

chr 2: 68,213,613 bp

(NCBI July 2003 human genome assembly)

AC079112 has 12 repeats

Repeat: [TCTA] = GenBank top strand

 

Reported Primers

Ref.

PCR Primer Sequences

Set 1

GDB

5'-TGCACCCAACATTCTAACAA-3'

5'-ATTGGAGCTAAGTGGCTGTG-3'
Set 2 Coble and Butler (2005)

5'-[VIC]-CTGTGGCTCATCTATGAAAACTT-3'

5'-GAAGTGGCTGTGGTGTTATGAT-3'

 

PCR Product Sizes of Observed Alleles

Allele

(Repeat #)

Set 1

Set 2

miniSTR

Repeat Structure

Ref.

8

 

 78 bp

[TCTA]8

 

9

 

 82 bp

[TCTA]9

 

10

 

 86 bp

[TCTA]10

 

11

 

 90 bp

[TCTA]11

 

11.3

 

 93 bp

 

 

12

 

 94 bp

[TCTA]12

 

12.3

 

 97 bp

 

 
13   98 bp [TCTA]13  
13.3   101 bp    
14   102 bp [TCTA]14  
14.3   105 bp    
15   106 bp [TCTA]15  
16   110 bp [TCTA]16  
17   114 bp [TCTA]17  

Allelic Ladders: NIST ladder alleles 9,10,11,11.3, 12, 12.3, 13, 13.3, 14, 14.3, 15, 16, 17

Assay Available: NIST NC02

Genotypes from Standard Samples: 9947A (10,14), 9948 (11,12), ABI 007 (14,15), K562 (10,14)

Population Data:  
Source Number of Samples Population
Coble and Butler (2005)/Hill et al. (2006) 265 U.S. Caucasians
Coble and Butler (2005)/Hill et al. (2006) 257 African Americans
Coble and Butler (2005)/Hill et al. (2006) 140 U.S. Hispanics
Asamura et al. (2006) IJLM 142 Japanese
Martin et al. (2006) FSI 264 Spanish
Yong et al. (2006) FSI 185 Singapore/Chinese
Yong et al. (2006) FSI 182 Singapore/Malay
Yong et al. (2006) FSI 178 Singapore/Indian
Simon Lim, in preparation 226 Chinese
Simon Lim, in preparation 238 Malaysian
Simon Lim, in preparation 238 East Indian
Prof. Ranieri Domenici, in preparation 100 Italian
     
  total = 2,415  

Reference Sequence: GenBank accession AC079112; positions 85,324..85,415

 

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