D2S1338

Other Names

Chromosomal Location

GenBank Accession

UniSTS: 30509

2q35

Chr 2; 218.705 Mb (May 2004, NCBI build 35)

AC010136; has 23 repeats if T/G SNP is included

G08202; has 17 repeats

Repeat: [TGCC]n[TTCC]n

Reported Primers

Ref.

 PCR Primer Sequences
Set 1 ABI Primer sequences proprietary to Applied Biosystems kits: SGM Plus (5-FAM labeled), SEfiler (6-FAM labeled)
Set 2 ABI Identifiler (VIC labeled with *mobility modifier)

PCR Product Sizes of Observed Alleles  

Allele

(Repeat #)

Set 1

Set 2*

Repeat Structure

Ref.
11 277 bp 291 bp   variant allele
12 281 bp 295 bp    
13 285 bp 299 bp   variant allele
14 289 bp 303 bp    
15 293 bp 307 bp   allelic ladder
16 297 bp 311 bp   allelic ladder

17

301 bp

315 bp

[TGCC]6[TTCC]11

allelic ladder;

GenBank G08202
18 305 bp 319 bp   allelic ladder
19 309 bp 323 bp   allelic ladder
19.3 312 bp 326 bp   variant allele
20 313 bp 327 bp   allelic ladder
21 317 bp 331 bp   allelic ladder
22 321 bp 335 bp   allelic ladder
23 325 bp 339 bp   allelic ladder
23' 325 bp 339 bp [TGCC]7[TTCC]13GTCC [TTCC]2 GenBank AC010136
23.2 327 bp 341 bp   variant allele
23.3 328 bp 342 bp   variant allele
24 329 bp 343 bp   allelic ladder
25 333 bp 347 bp   allelic ladder
26 337 bp 351 bp   allelic ladder
27  341 bp 355 bp   allelic ladder
28 345 bp

359 bp

   allelic ladder

Allelic Ladders: Commercially available from Applied Biosystems (ladder allele range: 15-28)

Common Multiplexes: SGM Plus, Identifiler, SEfiler

Mutation Rate: 0.12%

 

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Last Updated: 07/03/2007