Output for screening the Marshfield Set 12 (408 primers pairs)
http://research.marshfieldclinic.org/genetics/sets/combo.html
Note: results are best viewed in a Courier
type font
Number of Hits =
1224
Number of Sequences
= 816
Na+ = 0.085 Ct = 1.0
CATC015-F
TAACCACCCATTCATCAACC versus GATA30E06-F TCTGTCTTAGATGGATGAATGG
Matches = 11
Score = 9
CCATTCATCNANC
est. tm = 11.5 oC
DeltaG @37 degrees
= -3.74 kcal/mole
3'-GGTAAGTAGGTAGATTCTGTCT-5'
|||||||||x|x|
5'-TAACCACCCATTCATCAACC-3'
CATC015-F
TAACCACCCATTCATCAACC versus GATA22F09N-F GTTCAAGCATGGGTGGATAG
Matches = 15
Score = 11
GTTNANGNATGGGTGGNTA
est. tm = 19.6 oC
DeltaG @37 degrees
= -4.85 kcal/mole
5'-GTTCAAGCATGGGTGGATAG-3'
|||x|x|x||||||||x||
3'-CCAACTACTTACCCACCAAT-5'
CATC015-F
TAACCACCCATTCATCAACC versus GATA178G09-F ATGGGTGGATGTACAAATGG
Matches = 9
Score = 7
ATGGGTGGNTN
est. tm = 19.8 oC
DeltaG @37 degrees
= -6.21 kcal/mole
5'-ATGGGTGGATGTACAAATGG-3'
||||||||x|x
3'-CCAACTACTTACCCACCAAT-5'
CATC015-F
TAACCACCCATTCATCAACC versus GATA118G10-F ACATACGGATGAATGGATGG
Matches = 12
Score = 7
CCANCCATTCATCNNNN
est. tm = 24.5 oC
DeltaG @37 degrees
= -6.07 kcal/mole
3'-GGTAGGTAAGTAGGCATACA-5'
|||x|||||||||xxxx
5'-TAACCACCCATTCATCAACC-3'
CATC015-F
TAACCACCCATTCATCAACC versus GATA43H01-R ACGTGGTACAGGTAGATAAATGG
Matches = 11
Score = 9
CCATTNATCNACC
est. tm = 13.5 oC
DeltaG @37 degrees
= -4.25 kcal/mole
3'-GGTAAATAGATGGACATGGTGCA-5'
|||||x|||x|||
5'-TAACCACCCATTCATCAACC-3'
GATA185H04N-R
ATATTTCAATATTGTAACCAGTCC versus GATA27E01-F TTTATTGAGATATATTTGACATGCA
Matches = 10
Score = 7
NNTATTGANATAT
est. tm = 0.3 oC
DeltaG @37 degrees
= -1.71 kcal/mole
5'-TTTATTGAGATATATTTGACATGCA-3'
xx||||||x||||
3'-CCTGACCAATGTTATAACTTTATA-5'
ATA47D07-F
TCGAGGCTGCAGTGAACTAT versus AATA036-R ACTGACTGCAGCCTTGACCT
Matches = 13
Score = 9
NNTNACTGCAGCCTNGA
est. tm = 33.4 oC
DeltaG @37 degrees =
-8.43 kcal/mole
5'-ACTGACTGCAGCCTTGACCT-3'
xx|x||||||||||x||
3'-TATCAAGTGACGTCGGAGCT-5'
GATA129H04-F
AGAGAACGGAACCAACAGAA versus GATA43C11-F TTCAAGTGGTTGGGTTCACT
Matches = 14
Score = 8
TTCNNNTGGTTNNGTTCNCT
est. tm = 12.7 oC
DeltaG @37 degrees
= -3.07 kcal/mole
5'-TTCAAGTGGTTGGGTTCACT-3'
|||xxx|||||xx||||x||
3'-AAGACAACCAAGGCAAGAGA-5'
GATA129H04-F
AGAGAACGGAACCAACAGAA versus GATA43C11-F TTCAAGTGGTTGGGTTCACT
Matches = 14
Score = 8
AGNGAACNNAACCANNNGAA
est. tm = 12.7 oC
DeltaG @37 degrees
= -3.07 kcal/mole
3'-TCACTTGGGTTGGTGAACTT-5'
||x||||xx|||||xxx|||
5'-AGAGAACGGAACCAACAGAA-3'
GATA26G09N-F
CTCCAGAGAAGCAGAACCAG versus PAH-F GCCAGAACAACTGCTGGTTC
Matches = 7
Score = 7
GAACCAG
est. tm = 8.5 oC
DeltaG @37 degrees
= -4.45 kcal/mole
3'-CTTGGTCGTCAACAAGACCG-5'
|||||||
5'-CTCCAGAGAAGCAGAACCAG-3'
GATA109-F
TAGGCAAATAATAAAATTCTAACCA versus ATA25E07-F TAATTTTAATTTTCTCCAAATCTCC
Matches = 13
Score = 7
NAATTTTANTNTTNNCCNA
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-TAATTTTAATTTTCTCCAAATCTCC-3'
x|||||||x|x||xx||x|
3'-ACCAATCTTAAAATAATAAACGGAT-5'
GATA7C06-R
TAGGATTTTACTATATTCCCCAGG versus GATA109-F TAGGCAAATAATAAAATTCTAACCA
Matches = 15
Score = 9
NNGGNANATANTAAAATNCTA
est. tm = 2.0 oC
DeltaG @37 degrees
= -0.35 kcal/mole
5'-TAGGCAAATAATAAAATTCTAACCA-3'
xx||x|x|||x||||||x|||
3'-GGACCCCTTATATCATTTTAGGAT-5'
GATA61E03-R
GGTATTTTTTGCCCACATGA versus GATA109-F TAGGCAAATAATAAAATTCTAACCA
Matches = 11
Score = 7
TNGGCAAANAATANN
est. tm = 10.1 oC
DeltaG @37 degrees
= -3.58 kcal/mole
5'-TAGGCAAATAATAAAATTCTAACCA-3'
|x||||||x||||xx
3'-AGTACACCCGTTTTTTATGG-5'
GATA109-F
TAGGCAAATAATAAAATTCTAACCA versus GATA121A08N-F GTTAACAGACTATTACCTGCCTACC
Matches = 16
Score = 9
GTTANNANNNTATTANNTGCCTA
est. tm = 14.1 oC
DeltaG @37 degrees
= -2.27 kcal/mole
5'-GTTAACAGACTATTACCTGCCTACC-3'
||||xx|xxx|||||xx||||||
3'-ACCAATCTTAAAATAATAAACGGAT-5'
GATA169E06-R
TGGAATTCAGTTATTTGTTAATGC versus GATA109-F TAGGCAAATAATAAAATTCTAACCA
Matches = 14
Score = 7
TNNNCAAATAANNNAATTCNA
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-TAGGCAAATAATAAAATTCTAACCA-3'
|xxx|||||||xxx|||||x|
3'-CGTAATTGTTTATTGACTTAAGGT-5'
GATA124C08N-F
TTCTAACAAGCTCCCAGGTG versus GATA5D08-R TATGACAGGCATCTGGGAGT
Matches = 9
Score = 7
NCTCCCAGNTG
est. tm = 17.4 oC
DeltaG @37 degrees
= -5.60 kcal/mole
3'-TGAGGGTCTACGGACAGTAT-5'
x|||||||x||
5'-TTCTAACAAGCTCCCAGGTG-3'
GATA124C08N-F
TTCTAACAAGCTCCCAGGTG versus GATA193A07-R AGCCTGTGGCATCTTGTTAG
Matches = 13
Score = 8
CTAACAAGNTNCCANNNG
est. tm = 8.8 oC
DeltaG @37 degrees
= -2.40 kcal/mole
3'-GATTGTTCTACGGTGTCCGA-5'
||||||||x|x|||xxx|
5'-TTCTAACAAGCTCCCAGGTG-3'
GATA124C08N-F
TTCTAACAAGCTCCCAGGTG versus GATA176C01-F TCTCACTACACCACCTGGGT
Matches = 8
Score = 7
NCCCAGGTG
est. tm = 25.8 oC
DeltaG @37 degrees
= -7.24 kcal/mole
3'-TGGGTCCACCACATCACTCT-5'
x||||||||
5'-TTCTAACAAGCTCCCAGGTG-3'
GATA124C08N-F
TTCTAACAAGCTCCCAGGTG versus ATA7D07-R ACGGGAGCTTTTGAGAAGTT
Matches = 13
Score = 9
NNGGGAGCTTNTNAGAA
est. tm = 27.8 oC
DeltaG @37 degrees
= -7.00 kcal/mole
5'-ACGGGAGCTTTTGAGAAGTT-3'
xx||||||||x|x||||
3'-GTGGACCCTCGAACAATCTT-5'
ATA25E07-F
TAATTTTAATTTTCTCCAAATCTCC versus ATA50C05-F TTTGGAAAGAATCTGTATTATCTTT
Matches = 14
Score = 8
TTTGGANANAATNNNNATTA
est. tm = 4.0 oC
DeltaG @37 degrees
= -0.92 kcal/mole
5'-TTTGGAAAGAATCTGTATTATCTTT-3'
||||||x|x|||xxxx||||
3'-CCTCTAAACCTCTTTTAATTTTAAT-5'
ATA21F01-R
ATGACCAAAATGAAAATCACTG versus ATA25E07-F TAATTTTAATTTTCTCCAAATCTCC
Matches = 13
Score = 7
TNATTTTNATTTTNNNCAN
est. tm = 1.8 oC
DeltaG @37 degrees
= -0.92 kcal/mole
5'-TAATTTTAATTTTCTCCAAATCTCC-3'
|x|||||x|||||xxx||x
3'-GTCACTAAAAGTAAAACCAGTA-5'
GATA64G07-R
AGACTTGGACTGAATTACACTGC versus ATA25E07-F TAATTTTAATTTTCTCCAAATCTCC
Matches = 15
Score = 7
NNANTNTAATTNNNTCCAANTCT
est. tm = 5.3 oC
DeltaG @37 degrees
= -1.02 kcal/mole
5'-TAATTTTAATTTTCTCCAAATCTCC-3'
xx|x|x|||||xxx|||||x|||
3'-CGTCACATTAAGTCAGGTTCAGA-5'
AAAAC001-R
CCTTTGGAGAAAACTGAACTCG versus ATA25E07-F TAATTTTAATTTTCTCCAAATCTCC
Matches = 15
Score = 8
NNANTTNANTTTTCTCCAAANN
est. tm = 21.0 oC
DeltaG @37 degrees
= -4.70 kcal/mole
5'-TAATTTTAATTTTCTCCAAATCTCC-3'
xx|x||x|x|||||||||||xx
3'-GCTCAAGTCAAAAGAGGTTTCC-5'
ATA7D07-R
ACGGGAGCTTTTGAGAAGTT versus ATA25E07-F TAATTTTAATTTTCTCCAAATCTCC
Matches = 13
Score = 9
GGAGNTTTNGAGAANNT
est. tm = 10.4 oC
DeltaG @37 degrees
= -3.01 kcal/mole
3'-CCTCTAAACCTCTTTTAATTTTAAT-5'
||||x|||x|||||xx|
5'-ACGGGAGCTTTTGAGAAGTT-3'
ATA25E07-F
TAATTTTAATTTTCTCCAAATCTCC versus GATA165B12-R TTAAAATCATTTTCACTGTGTATGC
Matches = 8
Score = 7
TTAAAATNA
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.54 kcal/mole
5'-TTAAAATCATTTTCACTGTGTATGC-3'
|||||||x|
3'-CCTCTAAACCTCTTTTAATTTTAAT-5'
GATA12A07N-F
AGCACATAGCAGGCACTAGC versus ATA26B08-F ACTGGTATGTCCTAACCCCC
Matches = 10
Score = 7
NCTGNTATGTNCT
est. tm = 0.9 oC
DeltaG @37 degrees
= -2.53 kcal/mole
5'-ACTGGTATGTCCTAACCCCC-3'
x|||x|||||x||
3'-CGATCACGGACGATACACGA-5'
GATA71C09-F
GAGTTGCGTTACTTGATTTCTT versus GGAA5F09-F GCCATCAAGAAAACTAGTACTGC
Matches = 13
Score = 9
GCNNTACTNGNTTTCTT
est. tm = 10.1 oC
DeltaG @37 degrees
= -2.83 kcal/mole
3'-CGTCATGATCAAAAGAACTACCG-5'
||xx||||x|x||||||
5'-GAGTTGCGTTACTTGATTTCTT-3'
TATC028-F
CTGCATGACCTTGGGAAAAT versus ATT001-F GCCATGCAGGAAGGAGTAGA
Matches = 8
Score = 7
GNCATGCAG
est. tm = 6.3 oC
DeltaG @37 degrees
= -3.90 kcal/mole
5'-GCCATGCAGGAAGGAGTAGA-3'
|x|||||||
3'-TAAAAGGGTTCCAGTACGTC-5'
TATC028-F
CTGCATGACCTTGGGAAAAT versus GATA7C06-R TAGGATTTTACTATATTCCCCAGG
Matches = 10
Score = 8
CCTNGGGAANAT
est. tm = 6.9 oC
DeltaG @37 degrees
= -3.80 kcal/mole
3'-GGACCCCTTATATCATTTTAGGAT-5'
|||x|||||x||
5'-CTGCATGACCTTGGGAAAAT-3'
GATA7C01-F
TGCAGATCTTGGGACTTCTC versus GATA124F08-R GAGAAAGAAGCCCCAAGAAC
Matches = 13
Score = 10
GNTCTTGGGNCTTCTN
est. tm = 29.3 oC
DeltaG @37 degrees
= -7.36 kcal/mole
3'-CAAGAACCCCGAAGAAAGAG-5'
|x|||||||x|||||x
5'-TGCAGATCTTGGGACTTCTC-3'
GATA7C01-F
TGCAGATCTTGGGACTTCTC versus ATA26B08-R GATCTGCAGTTGGATTCTGG
Matches = 8
Score = 8
GATCTGCA
est. tm = 17.8 oC
DeltaG @37 degrees
= -5.69 kcal/mole
5'-GATCTGCAGTTGGATTCTGG-3'
||||||||
3'-CTCTTCAGGGTTCTAGACGT-5'
GATA7C01-F
TGCAGATCTTGGGACTTCTC versus GATA14E09-R GTCATAATATCTGCCAATGATTG
Matches = 11
Score = 7
GTCNNAANATCTGCN
est. tm = 15.5 oC
DeltaG @37 degrees
= -4.56 kcal/mole
5'-GTCATAATATCTGCCAATGATTG-3'
|||xx||x||||||x
3'-CTCTTCAGGGTTCTAGACGT-5'
GATA124F08-F
TATCTAGCTGGCTGGCTAGC versus GGAA22G10N-F AGTCAGCTTGATTGATCCAG
Matches = 10
Score = 7
AGNCAGCTNGATN
est. tm = 10.2 oC
DeltaG @37 degrees
= -4.25 kcal/mole
5'-AGTCAGCTTGATTGATCCAG-3'
||x|||||x|||x
3'-CGATCGGTCGGTCGATCTAT-5'
GATA124F08-F
TATCTAGCTGGCTGGCTAGC versus GATA27C08N-F GGCAGGCAGGTAGATAGACA
Matches = 13
Score = 10
GNCAGNCAGNTAGATA
est. tm = 7.8 oC
DeltaG @37 degrees
= -2.46 kcal/mole
5'-GGCAGGCAGGTAGATAGACA-3'
|x|||x|||x||||||
3'-CGATCGGTCGGTCGATCTAT-5'
GATA11E02N-F
TTGCCTTGTTAACATGTACAGG versus ATA29C07-F TTTCTCACCTTTAAATGTCATCA
Matches = 12
Score = 8
TGNTNACATNTANAGG
est. tm = less than zero
DeltaG @37 degrees
= -0.85 kcal/mole
3'-ACTACTGTAAATTTCCACTCTTT-5'
||x|x||||x||x|||
5'-TTGCCTTGTTAACATGTACAGG-3'
GATA32F05-R AAGGTCAGAATCCCTCATCC
versus ATA29C07-F TTTCTCACCTTTAAATGTCATCA
Matches = 9
Score = 7
NTTCTNACCTT
est. tm = 9.8 oC
DeltaG @37 degrees
= -4.28 kcal/mole
5'-TTTCTCACCTTTAAATGTCATCA-3'
x||||x|||||
3'-CCTACTCCCTAAGACTGGAA-5'
GATA22D12-F
TGCTATCAAATGACAAAGTTAGC versus GATA187D09N-F CTTAGTCTTTTCTTACCAAAACAGC
Matches = 13
Score = 8
CTTNGTCNTTTNNTANCA
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.09 kcal/mole
5'-CTTAGTCTTTTCTTACCAAAACAGC-3'
|||x|||x|||xx||x||
3'-CGATTGAAACAGTAAACTATCGT-5'
GATA72G09N-R
TTGGTGATTTAATTCCAGGC versus GATA22D12-F TGCTATCAAATGACAAAGTTAGC
Matches = 12
Score = 7
TGNNATNAAATNACNAA
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-TGCTATCAAATGACAAAGTTAGC-3'
||xx||x||||x||x||
3'-CGGACCTTAATTTAGTGGTT-5'
AAT243-F
AATCGCTTGAACCCAGGAG versus TTTA049-F TCCATGCGATTTATCCAAGA
Matches = 9
Score = 7
TNCANGCGATT
est. tm = 0.4 oC
DeltaG @37 degrees
= -3.11 kcal/mole
5'-TCCATGCGATTTATCCAAGA-3'
|x||x||||||
3'-GAGGACCCAAGTTCGCTAA-5'
GGAA20G10-F
TGGAATCGTTTTACCTCTGC versus GATA168F06-F ACAATTCCAGAAACTTCCCC
Matches = 8
Score = 7
ACNATTCCA
est. tm = less than 0 oC
DeltaG @37 degrees
= -2.95 kcal/mole
5'-ACAATTCCAGAAACTTCCCC-3'
||x||||||
3'-CGTCTCCATTTTGCTAAGGT-5'
GGAA20G10-F
TGGAATCGTTTTACCTCTGC versus UT7136-F AGGAGGCAGAGGTTACAGTA
Matches = 11
Score = 7
TNNTNTNACCTCTGC
est. tm = 4.8 oC
DeltaG @37 degrees
= -3.04 kcal/mole
3'-ATGACATTGGAGACGGAGGA-5'
|xx|x|x||||||||
5'-TGGAATCGTTTTACCTCTGC-3'
GATA8F07-F
CAGAAGCGTGGCAGTTTATT versus GATA89A11-F GCTTCTGAAAGCTTCTAGTTTACC
Matches = 7
Score = 7
GCTTCTG
est. tm = 10.4 oC
DeltaG @37 degrees
= -4.69 kcal/mole
5'-GCTTCTGAAAGCTTCTAGTTTACC-3'
|||||||
3'-TTATTTGACGGTGCGAAGAC-5'
ATA47C04N-F
TCTCTCACACAAAAAAACCC versus GATA164B08N-R TGGGGTATCCTGTGTCAGAGC
Matches = 14
Score = 8
NCTCTNACACANNANANCCC
est. tm = 16.6 oC
DeltaG @37 degrees
= -4.37 kcal/mole
3'-CGAGACTGTGTCCTATGGGGT-5'
x||||x|||||xx|x|x|||
5'-TCTCTCACACAAAAAAACCC-3'
ATA47C04N-F
TCTCTCACACAAAAAAACCC versus AGAT113Z-R CGCTACCACGGGTGTTTTTA
Matches = 9
Score = 7
NAAAAANACCC
est. tm = 10.9 oC
DeltaG @37 degrees
= -4.30 kcal/mole
3'-ATTTTTGTGGGCACCATCGC-5'
x|||||x||||
5'-TCTCTCACACAAAAAAACCC-3'
GATA66D01-F
TAATTCAAATCTTTCCTGTCAGG versus GATA66D01-F TAATTCAAATCTTTCCTGTCAGG
Matches = 8
Score = 7
CCTGNCAGG
est. tm = 7.3 oC
DeltaG @37 degrees
= -4.28 kcal/mole
3'-GGACTGTCCTTTCTAAACTTAAT-5'
||||x||||
5'-TAATTCAAATCTTTCCTGTCAGG-3'
ATT001-F
GCCATGCAGGAAGGAGTAGA versus GATA66D01-F TAATTCAAATCTTTCCTGTCAGG
Matches = 13
Score = 7
CCNNNCAGGAANGANTNGA
est. tm = 1.5 oC
DeltaG @37 degrees
= -1.62 kcal/mole
3'-GGACTGTCCTTTCTAAACTTAAT-5'
||xxx||||||x||x|x||
5'-GCCATGCAGGAAGGAGTAGA-3'
GATA66D01-F
TAATTCAAATCTTTCCTGTCAGG versus GATA66D01-R TAATTCAAATCTTTCCTGTCAGG
Matches = 8
Score = 7
CCTGNCAGG
est. tm = 7.3 oC
DeltaG @37 degrees
= -4.28 kcal/mole
3'-GGACTGTCCTTTCTAAACTTAAT-5'
||||x||||
5'-TAATTCAAATCTTTCCTGTCAGG-3'
GATA88G05-F
ACATGTCGATCTCAGCGTTC versus ATGT006Z-F AAGGCTGAGGTAGGCTTATTTTT
Matches = 13
Score = 7
AANGCTGAGNTNGNCNTNT
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-AAGGCTGAGGTAGGCTTATTTTT-3'
||x||||||x|x|x|x|x|
3'-CTTGCGACTCTAGCTGTACA-5'
GATA4E11-F
TGAGCGGAATGAAAAGAGAG versus GATA31F01-F TTGGTACTTAATAAACCCTCTTTT
Matches = 8
Score = 7
AAAAGAGNG
est. tm = less than zero
DeltaG @37 degrees
= -2.00 kcal/mole
3'-TTTTCTCCCAAATAATTCATGGTT-5'
|||||||x|
5'-TGAGCGGAATGAAAAGAGAG-3'
GATA4D07-F
AGGCCTCTCTTCGAATGATT versus GGAA20G10-R TATAGGTCAACGATAACTCATTCG
Matches = 8
Score = 7
CGAATGANT
est. tm = 1.6 oC
DeltaG @37 degrees
= -3.21 kcal/mole
3'-GCTTACTCAATAGCAACTGGATAT-5'
|||||||x|
5'-AGGCCTCTCTTCGAATGATT-3'
GATA4D07-F
AGGCCTCTCTTCGAATGATT versus GATA43H03N-R ATTTGAACAGAGGCATGTAC
Matches = 13
Score = 10
ATTNGAANAGAGGCNT
est. tm = 15.6 oC
DeltaG @37 degrees
= -4.41 kcal/mole
5'-ATTTGAACAGAGGCATGTAC-3'
|||x|||x||||||x|
3'-TTAGTAAGCTTCTCTCCGGA-5'
GATA62F03N-R
AGCCAAAATGTTATGCAAG versus ATA27H09-F CCAGGGACATTGCTTAACAT
Matches = 10
Score = 8
ATGTTANGCAAN
est. tm = 18.1 oC
DeltaG @37 degrees
= -5.30 kcal/mole
3'-TACAATTCGTTACAGGGACC-5'
||||||x||||x
5'-AGCCAAAATGTTATGCAAG-3'
ATA27H09-F
CCAGGGACATTGCTTAACAT versus GATA81D12-R TAATGTACCTGGTACCAAAAACA
Matches = 10
Score = 8
NAATGTNCCTGG
est. tm = 21.6 oC
DeltaG @37 degrees
= -6.06 kcal/mole
5'-TAATGTACCTGGTACCAAAAACA-3'
x|||||x|||||
3'-TACAATTCGTTACAGGGACC-5'
ATA27H09-F
CCAGGGACATTGCTTAACAT versus GATA4A10-R TCCCTGGGTGAAAATGAGTA
Matches = 7
Score = 7
TCCCTGG
est. tm = 13.4 oC
DeltaG @37 degrees
= -5.58 kcal/mole
5'-TCCCTGGGTGAAAATGAGTA-3'
|||||||
3'-TACAATTCGTTACAGGGACC-5'
GGAA30H04-F
ATTCTTCTCCCAAGAATGCC versus GATA65C03N-F CTCACTGTCTGGATTTCTTGG
Matches = 9
Score = 7
CCAAGAANNCC
est. tm = 9.2 oC
DeltaG @37 degrees
= -3.91 kcal/mole
3'-GGTTCTTTAGGTCTGTCACTC-5'
|||||||xx||
5'-ATTCTTCTCCCAAGAATGCC-3'
AAAT072-R
ACTCCACCCAGGAAGTCCA versus GATA65C03N-F CTCACTGTCTGGATTTCTTGG
Matches = 10
Score = 8
CCANGAANTCCA
est. tm = 9.2 oC
DeltaG @37 degrees
= -4.05 kcal/mole
3'-GGTTCTTTAGGTCTGTCACTC-5'
|||x|||x||||
5'-ACTCCACCCAGGAAGTCCA-3'
GATA65C03N-F
CTCACTGTCTGGATTTCTTGG versus GATA10G07-F AATCCAGTAAATGAAATAGTCATCA
Matches = 11
Score = 7
AATCCAGNNANTGAN
est. tm = 12.3 oC
DeltaG @37 degrees
= -4.10 kcal/mole
5'-AATCCAGTAAATGAAATAGTCATCA-3'
|||||||xx|x|||x
3'-GGTTCTTTAGGTCTGTCACTC-5'
UT7544-F
ACTCCAGTCTGTGTGACAG versus GATA65C03N-F CTCACTGTCTGGATTTCTTGG
Matches = 11
Score = 7
CNCACNGNCTGGANT
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.98 kcal/mole
5'-CTCACTGTCTGGATTTCTTGG-3'
|x|||x|x|||||x|
3'-GACAGTGTGTCTGACCTCA-5'
GATA7G10-R
GCCCAAAAAGACAGACAGAA versus GATA65C03N-F CTCACTGTCTGGATTTCTTGG
Matches = 13
Score = 7
CCNANAAANNCAGACAGNN
est. tm = 14.4 oC
DeltaG @37 degrees
= -3.80 kcal/mole
3'-GGTTCTTTAGGTCTGTCACTC-5'
||x|x|||xx|||||||xx
5'-GCCCAAAAAGACAGACAGAA-3'
GATA30E06-F
TCTGTCTTAGATGGATGAATGG versus GATA13-R AGACAGAAATATAGATGAGAATGCA
Matches = 7
Score = 7
AGACAGA
est. tm = 4.0 oC
DeltaG @37 degrees
= -4.09 kcal/mole
5'-AGACAGAAATATAGATGAGAATGCA-3'
|||||||
3'-GGTAAGTAGGTAGATTCTGTCT-5'
GATA30E06-F
TCTGTCTTAGATGGATGAATGG versus GATA129D11N-R TAGTACTCTACCATCCATCTATCCC
Matches = 11
Score = 7
NNGATNGATGNATGG
est. tm = 8.7 oC
DeltaG @37 degrees
= -3.21 kcal/mole
3'-CCCTATCTACCTACCATCTCATGAT-5'
xx|||x||||x||||
5'-TCTGTCTTAGATGGATGAATGG-3'
GGAT3F08-R
TATCCATCCATCCATCAACC versus GATA30E06-F TCTGTCTTAGATGGATGAATGG
Matches = 10
Score = 7
CCATNCATCNANC
est. tm = less than zero
DeltaG @37 degrees
= -1.01 kcal/mole
3'-GGTAAGTAGGTAGATTCTGTCT-5'
||||x||||x|x|
5'-TATCCATCCATCCATCAACC-3'
GGAT3F08-R
TATCCATCCATCCATCAACC versus GATA30E06-F TCTGTCTTAGATGGATGAATGG
Matches = 13
Score = 9
CCATNCATCCATCNANN
est. tm = 25.4 oC
DeltaG @37 degrees
= -6.33 kcal/mole
3'-GGTAAGTAGGTAGATTCTGTCT-5'
||||x||||||||x|xx
5'-TATCCATCCATCCATCAACC-3'
GATA23A02-F
AGAAACAGAACGGATAGGGT versus GATA64F08-R TGACACTATCAGCTCTCTGGC
Matches = 13
Score = 7
GNNANAGANCNGATAGNGT
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-CGGTCTCTCGACTATCACAGT-5'
|xx|x|||x|x|||||x||
5'-AGAAACAGAACGGATAGGGT-3'
GATA23A02-F AGAAACAGAACGGATAGGGT
versus GATA29A05-F TTTTGTTTCTTGATCTGGGC
Matches = 9
Score = 8
TTNTGTTTCT
est. tm = 4.3 oC
DeltaG @37 degrees
= -3.29 kcal/mole
5'-TTTTGTTTCTTGATCTGGGC-3'
||x|||||||
3'-TGGGATAGGCAAGACAAAGA-5'
ATA78D02N-F
GGCAAGAGTTTTCCCATTTT versus AGAT021-F GAAACTCCAAAGATGGCAAAA
Matches = 10
Score = 8
TTTTNCCATNTT
est. tm = less than zero
DeltaG @37 degrees
= -1.99 kcal/mole
3'-AAAACGGTAGAAACCTCAAAG-5'
||||x||||x||
5'-GGCAAGAGTTTTCCCATTTT-3'
GATA175D03-F
TGGAGTCTCTGGGTGAAGAG versus AGAT021-F GAAACTCCAAAGATGGCAAAA
Matches = 8
Score = 7
GANACTCCA
est. tm = 3.3 oC
DeltaG @37 degrees
= -3.73 kcal/mole
5'-GAAACTCCAAAGATGGCAAAA-3'
||x||||||
3'-GAGAAGTGGGTCTCTGAGGT-5'
GATA4G12-R
GCCATCTGTACTGTTCCCAG versus AGAT021-F GAAACTCCAAAGATGGCAAAA
Matches = 12
Score = 7
GNAACNNNANAGATGGC
est. tm = 7.7 oC
DeltaG @37 degrees
= -2.74 kcal/mole
5'-GAAACTCCAAAGATGGCAAAA-3'
|x|||xxx|x|||||||
3'-GACCCTTGTCATGTCTACCG-5'
GATA164B08N-F
CTGTGATCACACCACTGCAG versus GATA164B08N-F CTGTGATCACACCACTGCAG
Matches = 10
Score = 8
NTGTGATCACAN
est. tm = 33.3 oC
DeltaG @37 degrees
= -8.47 kcal/mole
5'-CTGTGATCACACCACTGCAG-3'
x||||||||||x
3'-GACGTCACCACACTAGTGTC-5'
GATA164B08N-F
CTGTGATCACACCACTGCAG versus ATA34G06-F GATCACAGGTTAATGGGTGC
Matches = 8
Score = 8
GATCACAG
est. tm = 14.7 oC
DeltaG @37 degrees
= -4.97 kcal/mole
5'-GATCACAGGTTAATGGGTGC-3'
||||||||
3'-GACGTCACCACACTAGTGTC-5'
GATA164B08N-F
CTGTGATCACACCACTGCAG versus UT5029-R AAATCATCAGTGGAGTTAGCA
Matches = 12
Score = 7
TGNTNACNCCACTGNNG
est. tm = less than zero
DeltaG @37 degrees
= -1.62 kcal/mole
3'-ACGATTGAGGTGACTACTAAA-5'
||x|x||x||||||xx|
5'-CTGTGATCACACCACTGCAG-3'
GATA164B08N-F
CTGTGATCACACCACTGCAG versus GATA23B01N-F GTGTAAGCAGTGTGCAGTGG
Matches = 8
Score = 7
CCACTGCAN
est. tm = 28.4 oC
DeltaG @37 degrees
= -7.68 kcal/mole
3'-GGTGACGTGTGACGAATGTG-5'
||||||||x
5'-CTGTGATCACACCACTGCAG-3'
GATA164B08N-F
CTGTGATCACACCACTGCAG versus GATA43C11-R TGGGTCTAGTCCAGTGGTGT
Matches = 10
Score = 8
ACACCACTGNAN
est. tm = 26.1 oC
DeltaG @37 degrees
= -7.05 kcal/mole
3'-TGTGGTGACCTGATCTGGGT-5'
|||||||||x|x
5'-CTGTGATCACACCACTGCAG-3'
GATA73D01-F
CATCTTTCTTTTCCTGTTCCC versus GATA65C03N-R TAAGAACAAGTAAAAAAAGCTGG
Matches = 15
Score = 9
NNGAACANGNAAANAAAGNTG
est. tm = 12.9 oC
DeltaG @37 degrees
= -2.77 kcal/mole
5'-TAAGAACAAGTAAAAAAAGCTGG-3'
xx|||||x|x|||x||||x||
3'-CCCTTGTCCTTTTCTTTCTAC-5'
GGAA2A03-F
CCTGGGCAACAGAATAAGAT versus GATA73D01-F CATCTTTCTTTTCCTGTTCCC
Matches = 12
Score = 8
GGNAACAGNANAAGAN
est. tm = 12.7 oC
DeltaG @37 degrees
= -3.99 kcal/mole
3'-CCCTTGTCCTTTTCTTTCTAC-5'
||x|||||x|x||||x
5'-CCTGGGCAACAGAATAAGAT-3'
GATA73D01-F
CATCTTTCTTTTCCTGTTCCC versus GATA22G05-R AAAACAAATATGGCTCTATCTATCG
Matches = 10
Score = 8
AAAANAAANATG
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.23 kcal/mole
5'-AAAACAAATATGGCTCTATCTATCG-3'
||||x|||x|||
3'-CCCTTGTCCTTTTCTTTCTAC-5'
GATA73D01-F
CATCTTTCTTTTCCTGTTCCC versus GATA46A12-R AAAGAGTAAACTCAATGAAAGATGC
Matches = 14
Score = 7
GNGNANANNNAANGAAAGATG
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
5'-AAAGAGTAAACTCAATGAAAGATGC-3'
|x|x|x|xxx||x||||||||
3'-CCCTTGTCCTTTTCTTTCTAC-5'
GATA6F06-F
ACCACATGAGCCAATTCTGT versus ATTT019-R TTCATGGCCACAGAATTCAC
Matches = 9
Score = 7
GNNAATTCTGT
est. tm = 1.4 oC
DeltaG @37 degrees
= -2.52 kcal/mole
3'-CACTTAAGACACCGGTACTT-5'
|xx||||||||
5'-ACCACATGAGCCAATTCTGT-3'
GATA6F06-F
ACCACATGAGCCAATTCTGT versus GATA11B12-R GGTGGAAATGCCTCATGTAG
Matches = 13
Score = 7
CNACATGAGNCANTTCNNN
est. tm = 12.7 oC
DeltaG @37 degrees
= -3.32 kcal/mole
3'-GATGTACTCCGTAAAGGTGG-5'
|x|||||||x||x|||xxx
5'-ACCACATGAGCCAATTCTGT-3'
GATA6F06-F
ACCACATGAGCCAATTCTGT versus GGAA4B09N-F ACAGAATGAGACCATGTGTCA
Matches = 14
Score = 8
ACAGAATNNGNNCATGTGNN
est. tm = 23.3 oC
DeltaG @37 degrees
= -5.45 kcal/mole
5'-ACAGAATGAGACCATGTGTCA-3'
|||||||xx|xx||||||xx
3'-TGTCTTAACCGAGTACACCA-5'
GATA6F06-F
ACCACATGAGCCAATTCTGT versus ATA19H08-F TTCCAGAGTATTTGCTTAAGAGG
Matches = 13
Score = 7
CCNCNTNAGCNAATNCTNT
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-GGAGAATTCGTTTATGAGACCTT-5'
||x|x|x|||x|||x||x|
5'-ACCACATGAGCCAATTCTGT-3'
GATA6F06-F
ACCACATGAGCCAATTCTGT versus GATA64H04-F GATGATAGAGATGGCACATGA
Matches = 12
Score = 7
NCATGNGCCANNTCTNT
est. tm = 12.8 oC
DeltaG @37 degrees
= -4.10 kcal/mole
3'-AGTACACGGTAGAGATAGTAG-5'
x||||x||||xx|||x|
5'-ACCACATGAGCCAATTCTGT-3'
ATA22G07-R
TGCTCTGTCTATGGAGTAGCC versus GATA7F05-F TCCAGAGAAACAGAATCAATAGG
Matches = 11
Score = 7
TCCANAGANANAGNA
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.61 kcal/mole
5'-TCCAGAGAAACAGAATCAATAGG-3'
||||x|||x|x||x|
3'-CCGATGAGGTATCTGTCTCGT-5'
GATA31D10-F
GTGGGACCTTGTGATTGTGT versus GATA7F05-F TCCAGAGAAACAGAATCAATAGG
Matches = 11
Score = 8
CCTNNTGATTNTGT
est. tm = 10.0 oC
DeltaG @37 degrees
= -3.55 kcal/mole
3'-GGATAACTAAGACAAAGAGACCT-5'
|||xx|||||x|||
5'-GTGGGACCTTGTGATTGTGT-3'
GATA84B12-F
ACCAAATGAGACAGTGGCAT versus ATA5A04N-F TGCCACTGACTTCATTGCTA
Matches = 14
Score = 9
TGCCACTGNCTNNNTTGNT
est. tm = 22.3 oC
DeltaG @37 degrees
= -5.54 kcal/mole
5'-TGCCACTGACTTCATTGCTA-3'
||||||||x||xxx|||x|
3'-TACGGTGACAGAGTAAACCA-5'
GATA84B12-F
ACCAAATGAGACAGTGGCAT versus ATTT019-F GCTGCCACTTTCCCTTTTAC
Matches = 13
Score = 7
NNAAANGNGANAGTGGCAN
est. tm = 22.2 oC
DeltaG @37 degrees
= -5.72 kcal/mole
3'-CATTTTCCCTTTCACCGTCG-5'
xx|||x|x||x|||||||x
5'-ACCAAATGAGACAGTGGCAT-3'
GATA84B12-F
ACCAAATGAGACAGTGGCAT versus GATA12F04-R TATAGGCACATGCCACTGTG
Matches = 10
Score = 9
NACAGTGGCAT
est. tm = 35.3 oC
DeltaG @37 degrees
= -8.98 kcal/mole
3'-GTGTCACCGTACACGGATAT-5'
x||||||||||
5'-ACCAAATGAGACAGTGGCAT-3'
GATA84B12-F
ACCAAATGAGACAGTGGCAT versus ATA28C05-F TGTCTGCTAATGAATGATTTGG
Matches = 13
Score = 7
CCAAATNANNCANTNGCAN
est. tm = 9.1 oC
DeltaG @37 degrees
= -3.03 kcal/mole
3'-GGTTTAGTAAGTAATCGTCTGT-5'
||||||x|xx||x|x|||x
5'-ACCAAATGAGACAGTGGCAT-3'
ATA34G06-F
GATCACAGGTTAATGGGTGC versus TTAT023z-R CCTGTAATCCCAGCTGCTCT
Matches = 8
Score = 7
CCTGTNATC
est. tm = 2.1 oC
DeltaG @37 degrees
= -3.35 kcal/mole
5'-CCTGTAATCCCAGCTGCTCT-3'
|||||x|||
3'-CGTGGGTAATTGGACACTAG-5'
ATA34G06-F
GATCACAGGTTAATGGGTGC versus GGAT3F08-R TATCCATCCATCCATCAACC
Matches = 10
Score = 7
GGTTNATGGNTGN
est. tm = 12.0 oC
DeltaG @37 degrees
= -4.49 kcal/mole
3'-CCAACTACCTACCTACCTAT-5'
||||x||||x||x
5'-GATCACAGGTTAATGGGTGC-3'
GATA3C02-F
TTTAAGCGGAAGGAAGTGTG versus ATA29C03-F GACTCTGCTAAGCACATTTCC
Matches = 8
Score = 7
GGAANTGTG
est. tm = 4.6 oC
DeltaG @37 degrees
= -3.66 kcal/mole
3'-CCTTTACACGAATCGTCTCAG-5'
||||x||||
5'-TTTAAGCGGAAGGAAGTGTG-3'
GATA3C02-F
TTTAAGCGGAAGGAAGTGTG versus ATA47C04N-R AACATATCCTTCCCCTTCCA
Matches = 14
Score = 8
NACANNTCCTTCCNCTTNNA
est. tm = 19.2 oC
DeltaG @37 degrees
= -4.75 kcal/mole
5'-AACATATCCTTCCCCTTCCA-3'
x|||xx|||||||x|||xx|
3'-GTGTGAAGGAAGGCGAATTT-5'
GATA3C02-F
TTTAAGCGGAAGGAAGTGTG versus ATA47C04N-R AACATATCCTTCCCCTTCCA
Matches = 14
Score = 8
TNNAAGNGGAAGGANNTGTN
est. tm = 20.8 oC
DeltaG @37 degrees
= -5.15 kcal/mole
3'-ACCTTCCCCTTCCTATACAA-5'
|xx|||x|||||||xx|||x
5'-TTTAAGCGGAAGGAAGTGTG-3'
GATA3C02-F
TTTAAGCGGAAGGAAGTGTG versus GATA30D09N-F TCCAAGTAAAGGCCAGACTTCC
Matches = 8
Score = 7
GGAAGTNTG
est. tm = 3.3 oC
DeltaG @37 degrees
= -3.49 kcal/mole
3'-CCTTCAGACCGGAAATGAACCT-5'
||||||x||
5'-TTTAAGCGGAAGGAAGTGTG-3'
GATA3C02-F
TTTAAGCGGAAGGAAGTGTG versus GATA32B03-R AGGTATGGTGCCACACACTT
Matches = 7
Score = 7
AAGTGTG
est. tm = 6.1 oC
DeltaG @37 degrees
= -4.16 kcal/mole
3'-TTCACACACCGTGGTATGGA-5'
|||||||
5'-TTTAAGCGGAAGGAAGTGTG-3'
GATA3H01-F
AAACCGCTGTGCACTTTATC versus ATA27F01-F GAGTTTGAAAATAAAGTGTTCTGC
Matches = 11
Score = 7
GCNGNNCACTTTATN
est. tm = 10.9 oC
DeltaG @37 degrees
= -3.54 kcal/mole
3'-CGTCTTGTGAAATAAAAGTTTGAG-5'
||x|xx||||||||x
5'-AAACCGCTGTGCACTTTATC-3'
GATA3H01-F
AAACCGCTGTGCACTTTATC versus ATA18A07-R TATATGAAGTGCTTAGAAAAAGTGC
Matches = 9
Score = 8
GCACTTTNTC
est. tm = 13.5 oC
DeltaG @37 degrees
= -4.63 kcal/mole
3'-CGTGAAAAAGATTCGTGAAGTATAT-5'
|||||||x||
5'-AAACCGCTGTGCACTTTATC-3'
TTTA040-F
GGGTGCAGTTTTTCTCTGCT versus GATA73D10N-F TCATGACAAAACAGAAAATAAGTG
Matches = 11
Score = 7
CANTTNTTNTCTGNT
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-GTGAATAAAAGACAAAACAGTACT-5'
||x||x||x||||x|
5'-GGGTGCAGTTTTTCTCTGCT-3'
TTTA040-F
GGGTGCAGTTTTTCTCTGCT versus GATA8G10-F GGGACAGAGAAGCAGAGAAG
Matches = 9
Score = 8
NTTCTCTGCT
est. tm = 25.6 oC
DeltaG @37 degrees
= -6.95 kcal/mole
3'-GAAGAGACGAAGAGACAGGG-5'
x|||||||||
5'-GGGTGCAGTTTTTCTCTGCT-3'
AAAT072-R
ACTCCACCCAGGAAGTCCA versus TTTA040-F GGGTGCAGTTTTTCTCTGCT
Matches = 8
Score = 7
GGGTGNAGT
est. tm = 6.8 oC
DeltaG @37 degrees
= -4.38 kcal/mole
5'-GGGTGCAGTTTTTCTCTGCT-3'
|||||x|||
3'-ACCTGAAGGACCCACCTCA-5'
GATA49C09N-F
GCAACAGAGCAAGACTGTC versus TTTA040-F GGGTGCAGTTTTTCTCTGCT
Matches = 12
Score = 7
ANCAGAGNAANACTGNN
est. tm = 8.3 oC
DeltaG @37 degrees
= -3.15 kcal/mole
3'-TCGTCTCTTTTTGACGTGGG-5'
|x|||||x||x||||xx
5'-GCAACAGAGCAAGACTGTC-3'
TTTA040-F
GGGTGCAGTTTTTCTCTGCT versus ATA18A07-R TATATGAAGTGCTTAGAAAAAGTGC
Matches = 12
Score = 8
GCANTTTTTCTNNGCN
est. tm = 23.2 oC
DeltaG @37 degrees
= -5.91 kcal/mole
3'-CGTGAAAAAGATTCGTGAAGTATAT-5'
|||x|||||||xx||x
5'-GGGTGCAGTTTTTCTCTGCT-3'
ATA50C05-R
GCATAATGCACATGCCTGTA versus ATA22E01-F GTACATTCTGCACACGTACCC
Matches = 9
Score = 7
GTNCATTNTGC
est. tm = less than 0 oC
DeltaG @37 degrees
= -2.66 kcal/mole
5'-GTACATTCTGCACACGTACCC-3'
||x||||x|||
3'-ATGTCCGTACACGTAATACG-5'
GATA22G12-F
AAAGCTAGAAGGAGCTGGCT versus 4PTEL04-F CTAGCTTTGATTCTATTGACC
Matches = 8
Score = 8
CTAGCTTT
est. tm = 11.1 oC
DeltaG @37 degrees
= -4.47 kcal/mole
5'-CTAGCTTTGATTCTATTGACC-3'
||||||||
3'-TCGGTCGAGGAAGATCGAAA-5'
GGAA2A03-F
CCTGGGCAACAGAATAAGAT versus 4PTEL04-F CTAGCTTTGATTCTATTGACC
Matches = 12
Score = 7
GGNCAANAGAATNANAN
est. tm = less than zero
DeltaG @37 degrees
= -1.44 kcal/mole
3'-CCAGTTATCTTAGTTTCGATC-5'
||x|||x|||||x|x|x
5'-CCTGGGCAACAGAATAAGAT-3'
ATT015-F
AGCACCCATATTTGCAGGAA versus GATA50D10-F ATGCCTACAAAAACCAGTGC
Matches = 13
Score = 7
GCACNNNTNTTTGNAGGNA
est. tm = 4.1 oC
DeltaG @37 degrees
= -2.01 kcal/mole
3'-CGTGACCAAAAACATCCGTA-5'
||||xxx|x||||x|||x|
5'-AGCACCCATATTTGCAGGAA-3'
ATT015-F
AGCACCCATATTTGCAGGAA versus GATA86H01-F GGTGCTTGCTGTAAATATAATTG
Matches = 13
Score = 8
CANNNATATTTNCAGNAA
est. tm = 0.2 oC
DeltaG @37 degrees
= -0.53 kcal/mole
3'-GTTAATATAAATGTCGTTCGTGG-5'
||xxx||||||x|||x||
5'-AGCACCCATATTTGCAGGAA-3'
ATT015-F
AGCACCCATATTTGCAGGAA versus TATC043-F GCCATCCTCCTGCAAATAAG
Matches = 12
Score = 10
CNTATTTGCAGGAN
est. tm = 31.0 oC
DeltaG @37 degrees
= -7.77 kcal/mole
3'-GAATAAACGTCCTCCTACCG-5'
|x|||||||||||x
5'-AGCACCCATATTTGCAGGAA-3'
UT1772-R
GGGTGCTAGGTGTGCTCA versus ATT015-F AGCACCCATATTTGCAGGAA
Matches = 7
Score = 7
AGCACCC
est. tm = 17.4 oC
DeltaG @37 degrees
= -6.12 kcal/mole
5'-AGCACCCATATTTGCAGGAA-3'
|||||||
3'-ACTCGTGTGGATCGTGGG-5'
ATA27C07-F
CATGCACACCAAAACAAGAA versus GATA22D12-R TTTGATGAGCTTGAACTAGGG
Matches = 10
Score = 7
TTTGNTGNGCNTG
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.79 kcal/mole
5'-TTTGATGAGCTTGAACTAGGG-3'
||||x||x||x||
3'-AAGAACAAAACCACACGTAC-5'
GATA61E03-R
GGTATTTTTTGCCCACATGA versus ATA21F01-F GGTTTAAAAATACATCATGTGGC
Matches = 8
Score = 7
NCCACATGA
est. tm = 18.4 oC
DeltaG @37 degrees
= -5.89 kcal/mole
3'-CGGTGTACTACATAAAAATTTGG-5'
x||||||||
5'-GGTATTTTTTGCCCACATGA-3'
GATA189C06-R
GGAAGCCAAATGTTGAATTG versus ATA21F01-F GGTTTAAAAATACATCATGTGGC
Matches = 12
Score = 8
GCCANATGNTGNATTN
est. tm = 15.3 oC
DeltaG @37 degrees
= -4.53 kcal/mole
3'-CGGTGTACTACATAAAAATTTGG-5'
||||x|||x||x|||x
5'-GGAAGCCAAATGTTGAATTG-3'
ATA21F01-F
GGTTTAAAAATACATCATGTGGC versus ATA27D04N-F TAACTATGTCATCTAGCCAAATGA
Matches = 8
Score = 7
TCATNTGGC
est. tm = 6.7 oC
DeltaG @37 degrees
= -4.24 kcal/mole
3'-AGTAAACCGATCTACTGTATCAAT-5'
||||x||||
5'-GGTTTAAAAATACATCATGTGGC-3'
GATA64H04-F
GATGATAGAGATGGCACATGA versus ATA21F01-F GGTTTAAAAATACATCATGTGGC
Matches = 8
Score = 7
GNCACATGA
est. tm = 0.1 oC
DeltaG @37 degrees
= -3.09 kcal/mole
3'-CGGTGTACTACATAAAAATTTGG-5'
|x|||||||
5'-GATGATAGAGATGGCACATGA-3'
ATA7D07-F
ATCCCACAGGATGCCTATTT versus ATA21F01-F GGTTTAAAAATACATCATGTGGC
Matches = 13
Score = 8
NCCACANGATGNNTNTTT
est. tm = 13.7 oC
DeltaG @37 degrees
= -3.78 kcal/mole
3'-CGGTGTACTACATAAAAATTTGG-5'
x|||||x||||xx|x|||
5'-ATCCCACAGGATGCCTATTT-3'
GATA24H01N-F
CAGGGAGACAGAACCAACTG versus GATA73E11-F TTGGTGGTGTCATCCTCTTT
Matches = 12
Score = 7
TTGGTNNTGTCNNCCTN
est. tm = 21.5 oC
DeltaG @37 degrees
= -5.69 kcal/mole
5'-TTGGTGGTGTCATCCTCTTT-3'
|||||xx||||xx|||x
3'-GTCAACCAAGACAGAGGGAC-5'
GATA24H01N-F
CAGGGAGACAGAACCAACTG versus GATA151F03N-F CTGGACAGTCAGTTGGAGCT
Matches = 9
Score = 7
AGNNCCAACTG
est. tm = 8.3 oC
DeltaG @37 degrees
= -3.90 kcal/mole
3'-TCGAGGTTGACTGACAGGTC-5'
||xx|||||||
5'-CAGGGAGACAGAACCAACTG-3'
ATA2A03-F
CCACGTGACTTTCATTAGGG versus GATA88H02N-F TGAGTTTTTCCTATTGAGAGTCC
Matches = 11
Score = 7
NGACTNTCANTAGGN
est. tm = 17.4 oC
DeltaG @37 degrees
= -5.12 kcal/mole
3'-CCTGAGAGTTATCCTTTTTGAGT-5'
x||||x|||x||||x
5'-CCACGTGACTTTCATTAGGG-3'
ATA2A03-F
CCACGTGACTTTCATTAGGG versus ATA21F01-R ATGACCAAAATGAAAATCACTG
Matches = 13
Score = 8
NNGTGANTTTCATTNNGG
est. tm = 19.7 oC
DeltaG @37 degrees
= -4.71 kcal/mole
3'-GTCACTAAAAGTAAAACCAGTA-5'
xx||||x|||||||xx||
5'-CCACGTGACTTTCATTAGGG-3'
ATA2A03-F
CCACGTGACTTTCATTAGGG versus ATA79C10-F GCCTTCATGGAGGTTACATG
Matches = 13
Score = 7
CANGTNACNTNCATNANGG
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-GTACATTGGAGGTACTTCCG-5'
||x||x||x|x|||x|x||
5'-CCACGTGACTTTCATTAGGG-3'
ATA2A03-F CCACGTGACTTTCATTAGGG
versus GATA6B09-F TTGCATCCATACGGAAAGTC
Matches = 11
Score = 8
GACTTTCNNTANGG
est. tm = 7.1 oC
DeltaG @37 degrees
= -2.74 kcal/mole
3'-CTGAAAGGCATACCTACGTT-5'
|||||||xx||x||
5'-CCACGTGACTTTCATTAGGG-3'
ATA2A03-F
CCACGTGACTTTCATTAGGG versus GGAA20C10-R TTCCTGTCCTCTAATGTAACTTACC
Matches = 12
Score = 7
NGTNANTTNCATTAGNG
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-CCATTCAATGTAATCTCCTGTCCTT-5'
x||x|x||x||||||x|
5'-CCACGTGACTTTCATTAGGG-3'
ATA2A03-F
CCACGTGACTTTCATTAGGG versus GATA188F04-R TACAGTAAATCACTTGGTAGGAGA
Matches = 12
Score = 7
TANNGNAANTCACNTGG
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.34 kcal/mole
5'-TACAGTAAATCACTTGGTAGGAGA-3'
||xx|x||x||||x|||
3'-GGGATTACTTTCAGTGCACC-5'
GATA62A12-F
AACTAGGCTGCTTCCCAGAT versus GATA41A01-F GTGTTGACCAACTGGGTAGC
Matches = 9
Score = 7
GCTNCCCAGNT
est. tm = 5.2 oC
DeltaG @37 degrees
= -4.03 kcal/mole
3'-CGATGGGTCAACCAGTTGTG-5'
|||x|||||x|
5'-AACTAGGCTGCTTCCCAGAT-3'
GATA62A12-F
AACTAGGCTGCTTCCCAGAT versus GGAA3C07-F ATGTACATGTGTCTGGGAAGG
Matches = 9
Score = 7
NCTTCCCAGAN
est. tm = 29.8 oC
DeltaG @37 degrees
= -7.84 kcal/mole
3'-GGAAGGGTCTGTGTACATGTA-5'
x|||||||||x
5'-AACTAGGCTGCTTCCCAGAT-3'
GATA107-F
GACTCCAAATCACATGAGCC versus GATA175D03-F TGGAGTCTCTGGGTGAAGAG
Matches = 7
Score = 7
TGGAGTC
est. tm = 8.8 oC
DeltaG @37 degrees
= -4.69 kcal/mole
5'-TGGAGTCTCTGGGTGAAGAG-3'
|||||||
3'-CCGAGTACACTAAACCTCAG-5'
GATA107-F
GACTCCAAATCACATGAGCC versus GATA163B10N-R TGGAGACAGCATGTGATTTG
Matches = 11
Score = 7
CAAATCACATGNNNN
est. tm = 24.4 oC
DeltaG @37 degrees
= -5.99 kcal/mole
3'-GTTTAGTGTACGACAGAGGT-5'
|||||||||||xxxx
5'-GACTCCAAATCACATGAGCC-3'
GATA107-F
GACTCCAAATCACATGAGCC versus GGAA8G07-R CCCTGGACTCATGGTACTTG
Matches = 11
Score = 7
CAANTNNCATGAGNC
est. tm = less than zero
DeltaG @37 degrees
= -1.11 kcal/mole
3'-GTTCATGGTACTCAGGTCCC-5'
|||x|xx||||||x|
5'-GACTCCAAATCACATGAGCC-3'
GATA27G03-F
GAGCCAGACCTTGTCTCAAA versus ATA29G03Z-R ATTTGGAATAAGGCCTGACT
Matches = 14
Score = 9
AGNCAGNCCTTNTNNCAAA
est. tm = 6.6 oC
DeltaG @37 degrees
= -2.25 kcal/mole
3'-TCAGTCCGGAATAAGGTTTA-5'
||x|||x||||x|xx||||
5'-GAGCCAGACCTTGTCTCAAA-3'
GATA12F04-F
AGCCATCTGGGCTTAGAGAT versus GATA42H02-F AGCACAAGATTCTCTAAGCCC
Matches = 11
Score = 10
GGGCTTAGAGAN
est. tm = 38.1 oC
DeltaG @37 degrees
= -9.64 kcal/mole
3'-CCCGAATCTCTTAGAACACGA-5'
|||||||||||x
5'-AGCCATCTGGGCTTAGAGAT-3'
GATA87E02N-F
GTTGTTGCTGGGCTTAGAAA versus GATA42H02-F AGCACAAGATTCTCTAAGCCC
Matches = 10
Score = 9
GGGCTTAGANA
est. tm = 20.5 oC
DeltaG @37 degrees
= -5.89 kcal/mole
3'-CCCGAATCTCTTAGAACACGA-5'
|||||||||x|
5'-GTTGTTGCTGGGCTTAGAAA-3'
GATA42H02-F
AGCACAAGATTCTCTAAGCCC versus GGAT1A4-R ATAGTTTTGTGCTTATTGACATGA
Matches = 10
Score = 7
ANANTNTTGTGCT
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.99 kcal/mole
5'-ATAGTTTTGTGCTTATTGACATGA-3'
|x|x|x|||||||
3'-CCCGAATCTCTTAGAACACGA-5'
GATA4G12-R
GCCATCTGTACTGTTCCCAG versus GATA5B02-F AATCCCTGGGTACATTATATTTG
Matches = 13
Score = 8
CANNTNTANTGTNCCCAG
est. tm = 5.8 oC
DeltaG @37 degrees
= -2.37 kcal/mole
3'-GTTTATATTACATGGGTCCCTAA-5'
||xx|x||x|||x|||||
5'-GCCATCTGTACTGTTCCCAG-3'
GATA5B02-F
AATCCCTGGGTACATTATATTTG versus GGAA20C10-R TTCCTGTCCTCTAATGTAACTTACC
Matches = 11
Score = 7
GGTANNTTANATTNG
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-CCATTCAATGTAATCTCCTGTCCTT-5'
||||xx|||x|||x|
5'-AATCCCTGGGTACATTATATTTG-3'
GATA145D10N-F
CCTGGAAGAACCAATGCTTA versus GATA6A05-R TTGTAATTCTTGGTCCTGCC
Matches = 12
Score = 7
GGNAGNACCAANNNTTA
est. tm = 1.5 oC
DeltaG @37 degrees
= -1.70 kcal/mole
3'-CCGTCCTGGTTCTTAATGTT-5'
||x||x|||||xxx|||
5'-CCTGGAAGAACCAATGCTTA-3'
GATA145D10N-F
CCTGGAAGAACCAATGCTTA versus GATA6G12-R GAAGACCTACGGATTGGGTC
Matches = 10
Score = 7
GANCCAATNCNTA
est. tm = less than zero
DeltaG @37 degrees
= -0.23 kcal/mole
3'-CTGGGTTAGGCATCCAGAAG-5'
||x|||||x|x||
5'-CCTGGAAGAACCAATGCTTA-3'
GATA145D10N-F
CCTGGAAGAACCAATGCTTA versus GATA6E05-R GTTCTTCAGGGAAACAGAACC
Matches = 9
Score = 7
GTTCTTCNNGG
est. tm = 6.8 oC
DeltaG @37 degrees
= -3.39 kcal/mole
5'-GTTCTTCAGGGAAACAGAACC-3'
|||||||xx||
3'-ATTCGTAACCAAGAAGGTCC-5'
GATA90D07N-R
CCCGGCCTTGATTTATTTAA versus GATA3E10-F TGTAAACTTCATGAAGGCAGG
Matches = 13
Score = 7
CCNGCCTTNATNNANTTNA
est. tm = less than zero
DeltaG @37 degrees
= -0.33 kcal/mole
3'-GGACGGAAGTACTTCAAATGT-5'
||x|||||x||xx|x||x|
5'-CCCGGCCTTGATTTATTTAA-3'
GATA3E10-F
TGTAAACTTCATGAAGGCAGG versus GATA50C03N-R CAAGTTTACAGTGAACTGTGGTCA
Matches = 9
Score = 8
NAAGTTTACA
est. tm = 16.6 oC
DeltaG @37 degrees
= -5.05 kcal/mole
5'-CAAGTTTACAGTGAACTGTGGTCA-3'
x|||||||||
3'-GGACGGAAGTACTTCAAATGT-5'
ATA79C10-F
GCCTTCATGGAGGTTACATG versus GATA3E10-F TGTAAACTTCATGAAGGCAGG
Matches = 16
Score = 14
TGTAANCTNCATGAAGGC
est. tm = 37.1 oC
DeltaG @37 degrees
= -9.42 kcal/mole
5'-TGTAAACTTCATGAAGGCAGG-3'
|||||x||x|||||||||
3'-GTACATTGGAGGTACTTCCG-5'
UT6540-F TTCCTCTGGCTTCTAGAAG
versus GATA3E10-F TGTAAACTTCATGAAGGCAGG
Matches = 11
Score = 7
NCTGNCTTCNNGAAG
est. tm = 9.1 oC
DeltaG @37 degrees
= -3.19 kcal/mole
3'-GGACGGAAGTACTTCAAATGT-5'
x|||x||||xx||||
5'-TTCCTCTGGCTTCTAGAAG-3'
GATA67D03-F
TTAAAGGAGTGATCTCCCCC versus Mfd232-F AGAGTGAGATTCCACCTTTC
Matches = 13
Score = 7
NAAAGGNGNNATCTCNCNC
est. tm = 0.2 oC
DeltaG @37 degrees
= -1.22 kcal/mole
3'-CTTTCCACCTTAGAGTGAGA-5'
x|||||x|xx|||||x|x|
5'-TTAAAGGAGTGATCTCCCCC-3'
GATA52A12-F
TTATAGAGCAGCCTTCCCTG versus GGAA3C07-F ATGTACATGTGTCTGGGAAGG
Matches = 8
Score = 7
CCTTCCCNG
est. tm = 6.6 oC
DeltaG @37 degrees
= -4.23 kcal/mole
3'-GGAAGGGTCTGTGTACATGTA-5'
|||||||x|
5'-TTATAGAGCAGCCTTCCCTG-3'
GATA3H06-F
CTTTCCCTCTCTTCCCACAT versus GATA43A04-F GGAAAGCCTGTAGGAAGAGG
Matches = 10
Score = 7
NCTCTTCCNACAN
est. tm = 23.7 oC
DeltaG @37 degrees
= -6.50 kcal/mole
3'-GGAGAAGGATGTCCGAAAGG-5'
x|||||||x|||x
5'-CTTTCCCTCTCTTCCCACAT-3'
GATA3H06-F
CTTTCCCTCTCTTCCCACAT versus GATA49D12N-R AGATAGAGGGAAAGGCATATGTG
Matches = 11
Score = 8
NNANAGAGGGAAAG
est. tm = 23.1 oC
DeltaG @37 degrees
= -6.07 kcal/mole
5'-AGATAGAGGGAAAGGCATATGTG-3'
xx|x||||||||||
3'-TACACCCTTCTCTCCCTTTC-5'
GATA62A04-F
TAAGTGCCAGAGTCTCCCAC versus GATA62A04-F TAAGTGCCAGAGTCTCCCAC
Matches = 12
Score = 7
GTGNNAGANTCTNNCAC
est. tm = 6.0 oC
DeltaG @37 degrees
= -2.31 kcal/mole
3'-CACCCTCTGAGACCGTGAAT-5'
|||xx|||x|||xx|||
5'-TAAGTGCCAGAGTCTCCCAC-3'
GATA62A04-F
TAAGTGCCAGAGTCTCCCAC versus AGAT125-R TGGCAAAGTCAGGCCATTAT
Matches = 13
Score = 7
TGGNANANTCNGGCNNTTA
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.47 kcal/mole
5'-TGGCAAAGTCAGGCCATTAT-3'
|||x|x|x||x|||xx|||
3'-CACCCTCTGAGACCGTGAAT-5'
ATA23A10-F
TTGGGAAGAATAGCTTTCCC versus GATA62F03N-F TTCCCAAAAGTTGCCATCTA
Matches = 7
Score = 7
TTCCCAA
est. tm = 5.7 oC
DeltaG @37 degrees
= -4.43 kcal/mole
5'-TTCCCAAAAGTTGCCATCTA-3'
|||||||
3'-CCCTTTCGATAAGAAGGGTT-5'
GATA11A11-F
TATCGAATTGTAACCCCGTT versus GATA168F06-F ACAATTCCAGAAACTTCCCC
Matches = 9
Score = 7
ACAATTCNANA
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.18 kcal/mole
5'-ACAATTCCAGAAACTTCCCC-3'
|||||||x|x|
3'-TTGCCCCAATGTTAAGCTAT-5'
AAAT072-F
GGCAGCAAGAGTGAAACTCA versus GATA8B01-R ATGGATAAATTGAGTTTCCCC
Matches = 9
Score = 7
NGNGAAACTCA
est. tm = 8.5 oC
DeltaG @37 degrees
= -3.93 kcal/mole
3'-CCCCTTTGAGTTAAATAGGTA-5'
x|x||||||||
5'-GGCAGCAAGAGTGAAACTCA-3'
AAAT072-F
GGCAGCAAGAGTGAAACTCA versus ATA4E02-R CTGCTTTGGGTTTCACTTGT
Matches = 11
Score = 8
ANNAGTGAAACNCA
est. tm = 8.3 oC
DeltaG @37 degrees
= -3.26 kcal/mole
3'-TGTTCACTTTGGGTTTCGTC-5'
|xx||||||||x||
5'-GGCAGCAAGAGTGAAACTCA-3'
AAAT072-F
GGCAGCAAGAGTGAAACTCA versus GATA22F11NZ-R TCTCTCTTGCTCCACTGCAA
Matches = 11
Score = 8
TCNCTCTTGCTNCN
est. tm = 18.7 oC
DeltaG @37 degrees
= -5.43 kcal/mole
5'-TCTCTCTTGCTCCACTGCAA-3'
||x||||||||x|x
3'-ACTCAAAGTGAGAACGACGG-5'
AAAT072-F
GGCAGCAAGAGTGAAACTCA versus GATA165B12-R TTAAAATCATTTTCACTGTGTATGC
Matches = 13
Score = 7
GCANNNANAGTGAAANTNA
est. tm = 2.1 oC
DeltaG @37 degrees
= -1.49 kcal/mole
3'-CGTATGTGTCACTTTTACTAAAATT-5'
|||xxx|x|||||||x|x|
5'-GGCAGCAAGAGTGAAACTCA-3'
GATA6G12-R
GAAGACCTACGGATTGGGTC versus TTA032Z-F GGTCTTCCTTGTGGTTTTTCA
Matches = 7
Score = 7
GGTCTTC
est. tm = 7.6 oC
DeltaG @37 degrees
= -4.31 kcal/mole
5'-GGTCTTCCTTGTGGTTTTTCA-3'
|||||||
3'-CTGGGTTAGGCATCCAGAAG-5'
GATA42H02-R
AAAGCCAAAAGATGATGCAA versus ATA50C05-F TTTGGAAAGAATCTGTATTATCTTT
Matches = 10
Score = 7
AAAGATNATNCAN
est. tm = less than zero
DeltaG @37 degrees
= -2.35 kcal/mole
3'-TTTCTATTATGTCTAAGAAAGGTTT-5'
||||||x||x||x
5'-AAAGCCAAAAGATGATGCAA-3'
ATA50C05-F
TTTGGAAAGAATCTGTATTATCTTT versus GGAA9D03-R TTCTTTCCTTACTAAGTTGAGAACG
Matches = 9
Score = 7
TTCTTTCCNNA
est. tm = 1.5 oC
DeltaG @37 degrees
= -2.84 kcal/mole
5'-TTCTTTCCTTACTAAGTTGAGAACG-3'
||||||||xx|
3'-TTTCTATTATGTCTAAGAAAGGTTT-5'
ATA50C05-F
TTTGGAAAGAATCTGTATTATCTTT versus GATA131D09-F AAAAATCTGACTCTATTCAAATGTT
Matches = 14
Score = 7
ANAANNCNGANTCTNTNCAAA
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-AAAAATCTGACTCTATTCAAATGTT-3'
|x||xx|x||x|||x|x||||
3'-TTTCTATTATGTCTAAGAAAGGTTT-5'
GATA21D04-R
TGCTTGGCACACTTCAGG versus GATA163B10N-F CATTTCAAACCCCTGAAGTG
Matches = 9
Score = 9
CACTTCAGG
est. tm = 24.5 oC
DeltaG @37 degrees
= -6.63 kcal/mole
3'-GTGAAGTCCCCAAACTTTAC-5'
|||||||||
5'-TGCTTGGCACACTTCAGG-3'
GATA163B10N-F
CATTTCAAACCCCTGAAGTG versus GATA68A03-R TTGAAATGGGCACAGAAATT
Matches = 8
Score = 8
TTGAAATG
est. tm = 8.4 oC
DeltaG @37 degrees
= -3.90 kcal/mole
5'-TTGAAATGGGCACAGAAATT-3'
||||||||
3'-GTGAAGTCCCCAAACTTTAC-5'
GATA163B10N-F
CATTTCAAACCCCTGAAGTG versus ATA33B03Z-R TAGTATCCACTTCCTGGGGT
Matches = 10
Score = 7
ANCCCNNGAAGTG
est. tm = 5.4 oC
DeltaG @37 degrees
= -3.33 kcal/mole
3'-TGGGGTCCTTCACCTATGAT-5'
|x|||xx||||||
5'-CATTTCAAACCCCTGAAGTG-3'
GATA6C01-R
TGGCACTAGATGTTTTCAAGG versus GATA11E02N-F TTGCCTTGTTAACATGTACAGG
Matches = 13
Score = 7
NCNNTANATGTTNNCAAGG
est. tm = 8.0 oC
DeltaG @37 degrees
= -2.27 kcal/mole
3'-GGACATGTACAATTGTTCCGTT-5'
x|xx||x|||||xx|||||
5'-TGGCACTAGATGTTTTCAAGG-3'
ATA28B11-F
CCTGATGGTCATGTGTCTGA versus GATA63A03N-F GTGGATAGACACATGACAGATAGG
Matches = 14
Score = 8
CCTNNNNGTCATGTGTCTNN
est. tm = 32.8 oC
DeltaG @37 degrees
= -8.05 kcal/mole
3'-GGATAGACAGTACACAGATAGGTG-5'
|||xxxx|||||||||||xx
5'-CCTGATGGTCATGTGTCTGA-3'
ATA11D10-F
TTGGAAGACATTTGCAGTCA versus GATA87E02N-R TTGATTGACTGCACTTTTCA
Matches = 11
Score = 7
NGANANNTGCAGTCA
est. tm = 17.7 oC
DeltaG @37 degrees
= -5.13 kcal/mole
3'-ACTTTTCACGTCAGTTAGTT-5'
x||x|xx||||||||
5'-TTGGAAGACATTTGCAGTCA-3'
GATA23F08-F
GAATGCAGGACTGTTTCTGG versus GATA81D12-R TAATGTACCTGGTACCAAAAACA
Matches = 8
Score = 7
TGTTTNTGG
est. tm = 1.1 oC
DeltaG @37 degrees
= -3.30 kcal/mole
3'-ACAAAAACCATGGTCCATGTAAT-5'
|||||x|||
5'-GAATGCAGGACTGTTTCTGG-3'
GATA23F08-F
GAATGCAGGACTGTTTCTGG versus SDF1-F GGCCTGAATTCATTTATTATTATTCTAATA
Matches = 9
Score = 7
GNCCTGNATTC
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.94 kcal/mole
5'-GGCCTGAATTCATTTATTATTATTCTAATA-3'
|x||||x||||
3'-GGTCTTTGTCAGGACGTAAG-5'
ATA6C09-F
ACTTGAATCCAGGCATTCAG versus ATCT003-R AGGATGCCACTAAATGCCTA
Matches = 9
Score = 7
NAGGCATTNAG
est. tm = 15.2 oC
DeltaG @37 degrees
= -5.12 kcal/mole
3'-ATCCGTAAATCACCGTAGGA-5'
x|||||||x||
5'-ACTTGAATCCAGGCATTCAG-3'
ATA6C09-F
ACTTGAATCCAGGCATTCAG versus GATA43C11-F TTCAAGTGGTTGGGTTCACT
Matches = 7
Score = 7
TTCAAGT
est. tm = 0.7 oC
DeltaG @37 degrees
= -3.52 kcal/mole
5'-TTCAAGTGGTTGGGTTCACT-3'
|||||||
3'-GACTTACGGACCTAAGTTCA-5'
ATA6C09-F
ACTTGAATCCAGGCATTCAG versus SDF1-F GGCCTGAATTCATTTATTATTATTCTAATA
Matches = 11
Score = 7
NGCCTGNATTCANNT
est. tm = 14.9 oC
DeltaG @37 degrees
= -4.62 kcal/mole
5'-GGCCTGAATTCATTTATTATTATTCTAATA-3'
x|||||x|||||xx|
3'-GACTTACGGACCTAAGTTCA-5'
ATA6C09-F
ACTTGAATCCAGGCATTCAG versus GATA172D05-R ATAATTGAAAGCCCGGATTC
Matches = 13
Score = 10
GAATCCNGGCNTTCAN
est. tm = 31.6 oC
DeltaG @37 degrees
= -7.92 kcal/mole
3'-CTTAGGCCCGAAAGTTAATA-5'
||||||x|||x||||x
5'-ACTTGAATCCAGGCATTCAG-3'
ATA22G07-F
CGTTCTGCACATGTATCCTG versus ATA79C10-F GCCTTCATGGAGGTTACATG
Matches = 9
Score = 7
CATGTANCCTN
est. tm = 11.8 oC
DeltaG @37 degrees
= -4.49 kcal/mole
3'-GTACATTGGAGGTACTTCCG-5'
||||||x|||x
5'-CGTTCTGCACATGTATCCTG-3'
ATA22G07-F
CGTTCTGCACATGTATCCTG versus GGAA2F11N-F AAGATACACAGGAAGAAAGAAAGG
Matches = 13
Score = 7
ANGATACANNNGNAGAANG
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-AAGATACACAGGAAGAAAGAAAGG-3'
|x||||||xxx|x||||x|
3'-GTCCTATGTACACGTCTTGC-5'
UT254-F
TCTCAGTGAAGGTAGACAGGA versus AFMb035xb9-F AACCTCAAGTCTACATTCATAGCGG
Matches = 14
Score = 7
NCNCNNTGAANGTAGACNNGA
est. tm = 4.6 oC
DeltaG @37 degrees
= -1.47 kcal/mole
3'-GGCGATACTTACATCTGAACTCCAA-5'
x|x|xx||||x||||||xx||
5'-TCTCAGTGAAGGTAGACAGGA-3'
GATA26G09N-R
ACATGAGCTGGTTCCCCTATGA versus AFMb035xb9-F AACCTCAAGTCTACATTCATAGCGG
Matches = 8
Score = 7
CCNCTATGA
est. tm = less than zero
DeltaG @37 degrees
= -2.43 kcal/mole
3'-GGCGATACTTACATCTGAACTCCAA-5'
||x||||||
5'-ACATGAGCTGGTTCCCCTATGA-3'
GGAA4A12-R
CGAATGCATACTTGCTGTTG versus AFMb035xb9-F AACCTCAAGTCTACATTCATAGCGG
Matches = 14
Score = 9
AACNNCAAGTNTNCATTCN
est. tm = 18.0 oC
DeltaG @37 degrees
= -4.37 kcal/mole
5'-AACCTCAAGTCTACATTCATAGCGG-3'
|||xx|||||x|x|||||x
3'-GTTGTCGTTCATACGTAAGC-5'
AAT034-F
CCCATCTATGAATGCACACG versus AFMb035xb9-F AACCTCAAGTCTACATTCATAGCGG
Matches = 13
Score = 8
CNNCTATGAATGNANACN
est. tm = 9.7 oC
DeltaG @37 degrees
= -2.69 kcal/mole
3'-GGCGATACTTACATCTGAACTCCAA-5'
|xx|||||||||x|x||x
5'-CCCATCTATGAATGCACACG-3'
GATA3C02-R
CTGGCCCCATCTCTCTCTAT versus GATA119B03-F ACCCCTGAGATGATAGATAGACA
Matches = 9
Score = 7
TNTCTNTCTAT
est. tm = less than zero
DeltaG @37 degrees
= -0.72 kcal/mole
3'-ACAGATAGATAGTAGAGTCCCCA-5'
|x|||x|||||
5'-CTGGCCCCATCTCTCTCTAT-3'
GATA119B03-F
ACCCCTGAGATGATAGATAGACA versus GATA188F04-F AACAGAACCAATAGGCTATCTATC
Matches = 10
Score = 8
GATAGATAGNCN
est. tm = 9.0 oC
DeltaG @37 degrees
= -3.39 kcal/mole
3'-CTATCTATCGGATAACCAAGACAA-5'
|||||||||x|x
5'-ACCCCTGAGATGATAGATAGACA-3'
GATA119B03-F
ACCCCTGAGATGATAGATAGACA versus GATA22G05-R AAAACAAATATGGCTCTATCTATCG
Matches = 10
Score = 7
NGATAGATAGANN
est. tm = 18.3 oC
DeltaG @37 degrees
= -4.99 kcal/mole
3'-GCTATCTATCTCGGTATAAACAAAA-5'
x||||||||||xx
5'-ACCCCTGAGATGATAGATAGACA-3'
GATA21F03-R
CCTGCCTGCCTATCTATCTG versus GATA119B03-F ACCCCTGAGATGATAGATAGACA
Matches = 11
Score = 8
TGNCTATCTATCNN
est. tm = 13.1 oC
DeltaG @37 degrees
= -3.83 kcal/mole
3'-ACAGATAGATAGTAGAGTCCCCA-5'
||x|||||||||xx
5'-CCTGCCTGCCTATCTATCTG-3'
GATA41G07-F
AAGCAATGCAGTGATCCATT versus GGAA23C05N-F GGAATAAGTGCAGTGCTTGG
Matches = 13
Score = 8
NGNATNANTGCANTGCTT
est. tm = 12.6 oC
DeltaG @37 degrees
= -3.93 kcal/mole
5'-GGAATAAGTGCAGTGCTTGG-3'
x|x||x|x||||x|||||
3'-TTACCTAGTGACGTAACGAA-5'
GATA41G07-F
AAGCAATGCAGTGATCCATT versus GATA50C03N-F GGATGATCACAATGCTTATGG
Matches = 12
Score = 7
GGATNANNNCANTGCTT
est. tm = 6.6 oC
DeltaG @37 degrees
= -2.69 kcal/mole
5'-GGATGATCACAATGCTTATGG-3'
||||x|xxx||x|||||
3'-TTACCTAGTGACGTAACGAA-5'
GATA41G07-F
AAGCAATGCAGTGATCCATT versus ATA23G05-R TGCATTGCATGAAAGTAGGA
Matches = 9
Score = 8
TGCATTGCNT
est. tm = 16.5 oC
DeltaG @37 degrees
= -5.46 kcal/mole
5'-TGCATTGCATGAAAGTAGGA-3'
||||||||x|
3'-TTACCTAGTGACGTAACGAA-5'
GATA41G07-F
AAGCAATGCAGTGATCCATT versus GATA68F07-F ATTGCTTCCCCTTTACCTGA
Matches = 7
Score = 7
ATTGCTT
est. tm = 2.8 oC
DeltaG @37 degrees
= -3.85 kcal/mole
5'-ATTGCTTCCCCTTTACCTGA-3'
|||||||
3'-TTACCTAGTGACGTAACGAA-5'
GATA13G11-F
TTGGGACCTCTTATTTTCCA versus GATA73D10N-F TCATGACAAAACAGAAAATAAGTG
Matches = 10
Score = 7
CNCTTATTTTCNN
est. tm = 6.5 oC
DeltaG @37 degrees
= -2.70 kcal/mole
3'-GTGAATAAAAGACAAAACAGTACT-5'
|x|||||||||xx
5'-TTGGGACCTCTTATTTTCCA-3'
GATA13G11-F
TTGGGACCTCTTATTTTCCA versus GATA169E06-F ACAGTTCCCAAGACTAAACAGC
Matches = 9
Score = 7
ANAGNTCCCAA
est. tm = less than 0 oC
DeltaG @37 degrees
= -2.78 kcal/mole
5'-ACAGTTCCCAAGACTAAACAGC-3'
|x||x||||||
3'-ACCTTTTATTCTCCAGGGTT-5'
GATA70B08-R
GTCCCAAAGGACCTGCTC versus GATA13G11-F TTGGGACCTCTTATTTTCCA
Matches = 7
Score = 7
TTGGGAC
est. tm = 10.0 oC
DeltaG @37 degrees
= -4.93 kcal/mole
5'-TTGGGACCTCTTATTTTCCA-3'
|||||||
3'-CTCGTCCAGGAAACCCTG-5'
GATA24D12-F
CCCTAACTCCCATGTTGATG versus UT5029-R AAATCATCAGTGGAGTTAGCA
Matches = 14
Score = 8
NNCTAACTCCNNTGNTGATN
est. tm = 26.1 oC
DeltaG @37 degrees
= -6.26 kcal/mole
3'-ACGATTGAGGTGACTACTAAA-5'
xx||||||||xx||x||||x
5'-CCCTAACTCCCATGTTGATG-3'
GATA24D12-F
CCCTAACTCCCATGTTGATG versus GGAA20C10-F AGCAAACTTCATCCACTTGG
Matches = 9
Score = 7
CCANGTNGATG
est. tm = less than zero
DeltaG @37 degrees
= -2.56 kcal/mole
3'-GGTTCACCTACTTCAAACGA-5'
|||x||x||||
5'-CCCTAACTCCCATGTTGATG-3'
GATA73D10N-F
TCATGACAAAACAGAAAATAAGTG versus AAT243-R TCACCCATTAATTCTTTGATTTGA
Matches = 13
Score = 7
NCAAANCANANAATNANTG
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-AGTTTAGTTTCTTAATTACCCACT-5'
x||||x||x|x|||x|x||
5'-TCATGACAAAACAGAAAATAAGTG-3'
GATA5D08-F
ACAAAACCCCAAGTACGTGA versus GATA32F05-F ATTTCACGTACTTGGCAAGC
Matches = 12
Score = 7
NNNNNCCAAGTACGTGA
est. tm = 31.1 oC
DeltaG @37 degrees
= -7.67 kcal/mole
3'-CGAACGGTTCATGCACTTTA-5'
xxxxx||||||||||||
5'-ACAAAACCCCAAGTACGTGA-3'
GATA5D08-F
ACAAAACCCCAAGTACGTGA versus GGAA22G01-R TCGTTGAGATTTTGTGCTATG
Matches = 11
Score = 7
TNNTTGNGNTTTTGT
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.55 kcal/mole
5'-TCGTTGAGATTTTGTGCTATG-3'
|xx|||x|x||||||
3'-AGTGCATGAACCCCAAAACA-5'
GATA41G07-R
AAAATCCTTTCAACAAATAGAAGC versus GGAA6D03N-F ATAGGATTTTATCACTCACAGATTT
Matches = 9
Score = 8
ANAGGATTTT
est. tm = 2.3 oC
DeltaG @37 degrees
= -3.08 kcal/mole
5'-ATAGGATTTTATCACTCACAGATTT-3'
|x||||||||
3'-CGAAGATAAACAACTTTCCTAAAA-5'
TTCA004-R
CCCAGAGCCTAAATCTGTGC versus GGAA6D03N-F ATAGGATTTTATCACTCACAGATTT
Matches = 9
Score = 8
AAATCTGTGN
est. tm = 21.2 oC
DeltaG @37 degrees
= -6.03 kcal/mole
3'-TTTAGACACTCACTATTTTAGGATA-5'
|||||||||x
5'-CCCAGAGCCTAAATCTGTGC-3'
ATA27D04N-R
AGTGGGTAGATCCTATGTGAGC versus GGAA6D03N-F ATAGGATTTTATCACTCACAGATTT
Matches = 12
Score = 8
ATAGGATNTNNNCACT
est. tm = 8.2 oC
DeltaG @37 degrees
= -2.81 kcal/mole
5'-ATAGGATTTTATCACTCACAGATTT-3'
|||||||x|xxx||||
3'-CGAGTGTATCCTAGATGGGTGA-5'
GATA8A05-R
TTTAACAGACAAATGACAAATCTG versus GGAA6D03N-F ATAGGATTTTATCACTCACAGATTT
Matches = 7
Score = 7
AAATCTG
est. tm = less than zero
DeltaG @37 degrees
= -3.00 kcal/mole
3'-TTTAGACACTCACTATTTTAGGATA-5'
|||||||
5'-TTTAACAGACAAATGACAAATCTG-3'
GATA63F08-F
TCTCTTACCCTTTGGGACCT versus GATA3H06-R CCTGGGGGTAAGAGGAGATA
Matches = 11
Score = 7
CCNNNGGGTAAGAGN
est. tm = 22.9 oC
DeltaG @37 degrees
= -6.04 kcal/mole
5'-CCTGGGGGTAAGAGGAGATA-3'
||xxx|||||||||x
3'-TCCAGGGTTTCCCATTCTCT-5'
ATA78D02N-R GGCAAGAGAACTCACGTAA
versus GATA63F08-F TCTCTTACCCTTTGGGACCT
Matches = 8
Score = 7
TCTCTTNCC
est. tm = less than 0 oC
DeltaG @37 degrees
= -3.12 kcal/mole
5'-TCTCTTACCCTTTGGGACCT-3'
||||||x||
3'-AATGCACTCAAGAGAACGG-5'
GATA63F08-F
TCTCTTACCCTTTGGGACCT versus GGAA20G04-R TTCACAAGGTTCCACAAGGT
Matches = 11
Score = 8
ACCNTNTGGNACCT
est. tm = 7.3 oC
DeltaG @37 degrees
= -3.94 kcal/mole
3'-TGGAACACCTTGGAACACTT-5'
|||x|x|||x||||
5'-TCTCTTACCCTTTGGGACCT-3'
GATA189C06-F
CCCCCATGAGTTATTCCTCT versus GATA8B01-F TGCCATAGCAGAGAGGGATA
Matches = 8
Score = 7
TATNCCTCT
est. tm = less than zero
DeltaG @37 degrees
= -2.19 kcal/mole
3'-ATAGGGAGAGACGATACCGT-5'
|||x|||||
5'-CCCCCATGAGTTATTCCTCT-3'
MFD442-GTTT002-F
GGAGTGAGTCCACCTTCCAA versus GGAA17G05-R ACACCTGGATCTTGGACTCA
Matches = 12
Score = 8
TGAGTCCANNNTCCAN
est. tm = 31.7 oC
DeltaG @37 degrees
= -7.99 kcal/mole
3'-ACTCAGGTTCTAGGTCCACA-5'
||||||||xxx||||x
5'-GGAGTGAGTCCACCTTCCAA-3'
MFD442-GTTT002-F
GGAGTGAGTCCACCTTCCAA versus ATA29G03Z-R ATTTGGAATAAGGCCTGACT
Matches = 13
Score = 8
AGTNAGNCCNNNTTCCAA
est. tm = 11.1 oC
DeltaG @37 degrees
= -3.36 kcal/mole
3'-TCAGTCCGGAATAAGGTTTA-5'
|||x||x||xxx||||||
5'-GGAGTGAGTCCACCTTCCAA-3'
TTCA004-F
CACCCAGCCCCTATGTTTTA versus ATAA018Z-F CTGGGTGACAGAGCAAGACC
Matches = 7
Score = 7
CTGGGTG
est. tm = 13.8 oC
DeltaG @37 degrees
= -5.41 kcal/mole
5'-CTGGGTGACAGAGCAAGACC-3'
|||||||
3'-ATTTTGTATCCCCGACCCAC-5'
ATAA018Z-F
CTGGGTGACAGAGCAAGACC versus ATA3A07-F GTCTGTAACCTAGGCAGGCA
Matches = 10
Score = 7
NTCTGTNACCNAG
est. tm = 11.0 oC
DeltaG @37 degrees
= -4.26 kcal/mole
5'-GTCTGTAACCTAGGCAGGCA-3'
x|||||x|||x||
3'-CCAGAACGAGACAGTGGGTC-5'
ATAA018Z-F
CTGGGTGACAGAGCAAGACC versus GATA2A12-F TGTGTTTGGGTTTCCTCTGT
Matches = 10
Score = 7
ACAGAGNAANNCC
est. tm = 2.7 oC
DeltaG @37 degrees
= -2.79 kcal/mole
3'-TGTCTCCTTTGGGTTTGTGT-5'
||||||x||xx||
5'-CTGGGTGACAGAGCAAGACC-3'
ATAA018Z-F
CTGGGTGACAGAGCAAGACC versus sRA-F CACTAGCACCCAGAACCGTC
Matches = 10
Score = 7
CNCTNNCACCCAG
est. tm = 8.8 oC
DeltaG @37 degrees
= -3.81 kcal/mole
5'-CACTAGCACCCAGAACCGTC-3'
|x||xx|||||||
3'-CCAGAACGAGACAGTGGGTC-5'
ATAA018Z-F
CTGGGTGACAGAGCAAGACC versus GATA27A03-F CAGTTACCCAGGAAGCTGAA
Matches = 9
Score = 7
CNGTNACCCAG
est. tm = 3.2 oC
DeltaG @37 degrees
= -3.48 kcal/mole
5'-CAGTTACCCAGGAAGCTGAA-3'
|x||x||||||
3'-CCAGAACGAGACAGTGGGTC-5'
ATAA018Z-F
CTGGGTGACAGAGCAAGACC versus GATA30G01-R AATGAGGTCTTACTTTGTTGCC
Matches = 13
Score = 9
GGNNACANAGNAAGACC
est. tm = 17.5 oC
DeltaG @37 degrees
= -4.60 kcal/mole
3'-CCGTTGTTTCATTCTGGAGTAA-5'
||xx|||x||x||||||
5'-CTGGGTGACAGAGCAAGACC-3'
UT7129-F
TAGAAGCCAGAAGAAGAGCA versus GATA89A11-F GCTTCTGAAAGCTTCTAGTTTACC
Matches = 12
Score = 7
NCTTCTNNNNGCTTCTA
est. tm = 19.5 oC
DeltaG @37 degrees
= -4.82 kcal/mole
5'-GCTTCTGAAAGCTTCTAGTTTACC-3'
x|||||xxxx|||||||
3'-ACGAGAAGAAGACCGAAGAT-5'
UT7129-F
TAGAAGCCAGAAGAAGAGCA versus GATA81D05-F GTGGTCTTCTACTTGTGTCAATAC
Matches = 14
Score = 8
TGNTCTTCTNCTNGNNTCNA
est. tm = less than zero
DeltaG @37 degrees
= -0.19 kcal/mole
5'-GTGGTCTTCTACTTGTGTCAATAC-3'
||x||||||x||x|xx||x|
3'-ACGAGAAGAAGACCGAAGAT-5'
UT6540-F
TTCCTCTGGCTTCTAGAAG versus UT7129-F TAGAAGCCAGAAGAAGAGCA
Matches = 14
Score = 13
TAGAAGCCAGANGAA
est. tm = 36.7 oC
DeltaG @37 degrees
= -9.27 kcal/mole
5'-TAGAAGCCAGAAGAAGAGCA-3'
|||||||||||x|||
3'-GAAGATCTTCGGTCTCCTT-5'
UT7129-F
TAGAAGCCAGAAGAAGAGCA versus GATA32B03-F AATAGTGACATTCTCTTCTTATGGC
Matches = 13
Score = 11
GCCANAAGAAGAGNA
est. tm = 28.0 oC
DeltaG @37 degrees
= -7.02 kcal/mole
3'-CGGTATTCTTCTCTTACAGTGATAA-5'
||||x||||||||x|
5'-TAGAAGCCAGAAGAAGAGCA-3'
UT7129-F
TAGAAGCCAGAAGAAGAGCA versus GATA11C06N-F GATCCCAAGCTCTTCCTCTT
Matches = 10
Score = 7
NAGANGAAGAGCN
est. tm = 24.3 oC
DeltaG @37 degrees
= -6.59 kcal/mole
3'-TTCTCCTTCTCGAACCCTAG-5'
x|||x|||||||x
5'-TAGAAGCCAGAAGAAGAGCA-3'
GATA8G10-F GGGACAGAGAAGCAGAGAAG
versus GATA21D04-F TAGGTTCTGGGCATGTCTGT
Matches = 12
Score = 7
ACAGANANGCNNAGAAN
est. tm = 12.3 oC
DeltaG @37 degrees
= -3.95 kcal/mole
3'-TGTCTGTACGGGTCTTGGAT-5'
|||||x|x||xx||||x
5'-GGGACAGAGAAGCAGAGAAG-3'
GATA41A01-F
GTGTTGACCAACTGGGTAGC versus GATA23D03N-R ATTCTTTGTCTCCCCAGTTG
Matches = 10
Score = 8
CAACTGGGNAGN
est. tm = 25.4 oC
DeltaG @37 degrees
= -6.87 kcal/mole
3'-GTTGACCCCTCTGTTTCTTA-5'
||||||||x||x
5'-GTGTTGACCAACTGGGTAGC-3'
GATA41A01-F
GTGTTGACCAACTGGGTAGC versus GATA45B10N-F GTGGTGAACACCAATAAATGG
Matches = 9
Score = 7
NTGGTNAACAC
est. tm = 16.2 oC
DeltaG @37 degrees
= -5.26 kcal/mole
5'-GTGGTGAACACCAATAAATGG-3'
x||||x|||||
3'-CGATGGGTCAACCAGTTGTG-5'
GATA41A01-F
GTGTTGACCAACTGGGTAGC versus GATA12H10-R TTGGTCAACATGTCAATTTAGG
Matches = 10
Score = 9
TTGGTCAACAN
est. tm = 32.6 oC
DeltaG @37 degrees
= -8.33 kcal/mole
5'-TTGGTCAACATGTCAATTTAGG-3'
||||||||||x
3'-CGATGGGTCAACCAGTTGTG-5'
GATA41A01-F
GTGTTGACCAACTGGGTAGC versus GATA63D12-R AATATTGACTTTCTCTTGCTACCC
Matches = 7
Score = 7
GGGTAGC
est. tm = 13.3 oC
DeltaG @37 degrees
= -5.32 kcal/mole
3'-CCCATCGTTCTCTTTCAGTTATAA-5'
|||||||
5'-GTGTTGACCAACTGGGTAGC-3'
UT254-F
TCTCAGTGAAGGTAGACAGGA versus GATA7G07-F TTTTTGTATTTCATGTGTACATTCG
Matches = 11
Score = 7
NGAANGTANACANGA
est. tm = less than zero
DeltaG @37 degrees
= -1.75 kcal/mole
3'-GCTTACATGTGTACTTTATGTTTTT-5'
x|||x|||x|||x||
5'-TCTCAGTGAAGGTAGACAGGA-3'
GATA7G07-F
TTTTTGTATTTCATGTGTACATTCG versus GATA52B03-R AAGTAAACATGTATAGGAAAAAGCT
Matches = 15
Score = 8
ANGTANACATGNANNNNAAAAA
est. tm = 2.5 oC
DeltaG @37 degrees
= -0.30 kcal/mole
5'-AAGTAAACATGTATAGGAAAAAGCT-3'
|x|||x|||||x|xxxx|||||
3'-GCTTACATGTGTACTTTATGTTTTT-5'
GATA178G09-F
ATGGGTGGATGTACAAATGG versus GATA7G07-F TTTTTGTATTTCATGTGTACATTCG
Matches = 11
Score = 7
NGNATGTACANATGN
est. tm = 13.4 oC
DeltaG @37 degrees
= -4.20 kcal/mole
3'-GCTTACATGTGTACTTTATGTTTTT-5'
x|x|||||||x|||x
5'-ATGGGTGGATGTACAAATGG-3'
GGAA2F11N-F
AAGATACACAGGAAGAAAGAAAGG versus GATA7G07-F TTTTTGTATTTCATGTGTACATTCG
Matches = 15
Score = 7
NTTTNNTNNTTCNTGTGTANNTT
est. tm = 6.3 oC
DeltaG @37 degrees
= -1.09 kcal/mole
5'-TTTTTGTATTTCATGTGTACATTCG-3'
x|||xx|xx|||x||||||xx||
3'-GGAAAGAAAGAAGGACACATAGAA-5'
GATA27A12-R
TGGCACATGTACACCAGAAC versus GATA7G07-F TTTTTGTATTTCATGTGTACATTCG
Matches = 12
Score = 7
CNNATGTACACNNGAAN
est. tm = 14.2 oC
DeltaG @37 degrees
= -3.72 kcal/mole
3'-GCTTACATGTGTACTTTATGTTTTT-5'
|xx||||||||xx|||x
5'-TGGCACATGTACACCAGAAC-3'
GGAA4B09N-R
CACACTCAAAATACATGAAGGC versus GATA7G07-F TTTTTGTATTTCATGTGTACATTCG
Matches = 13
Score = 7
TTNNTGTATTTNNNGTGTN
est. tm = 14.5 oC
DeltaG @37 degrees
= -3.41 kcal/mole
5'-TTTTTGTATTTCATGTGTACATTCG-3'
||xx|||||||xxx||||x
3'-CGGAAGTACATAAAACTCACAC-5'
GATA50D10-F
ATGCCTACAAAAACCAGTGC versus AGAT113Z-R CGCTACCACGGGTGTTTTTA
Matches = 11
Score = 7
TANAAANACCNGTGN
est. tm = 0.7 oC
DeltaG @37 degrees
= -2.37 kcal/mole
3'-ATTTTTGTGGGCACCATCGC-5'
||x|||x|||x|||x
5'-ATGCCTACAAAAACCAGTGC-3'
MFD455-AAT052-F
TTCAGATGCCAGCTTCAAGA versus GATA89A11-F GCTTCTGAAAGCTTCTAGTTTACC
Matches = 8
Score = 7
GCNTCTGAA
est. tm = 4.0 oC
DeltaG @37 degrees
= -3.69 kcal/mole
5'-GCTTCTGAAAGCTTCTAGTTTACC-3'
||x||||||
3'-AGAACTTCGACCGTAGACTT-5'
GATA62F03N-F
TTCCCAAAAGTTGCCATCTA versus GATA23F08-R TATATTTCTTGGGAAAGATAGATGG
Matches = 7
Score = 7
CCATCTA
est. tm = 0.3 oC
DeltaG @37 degrees
= -3.39 kcal/mole
3'-GGTAGATAGAAAGGGTTCTTTATAT-5'
|||||||
5'-TTCCCAAAAGTTGCCATCTA-3'
GATA62F03N-F
TTCCCAAAAGTTGCCATCTA versus GATA81C04-R TTAGCTGCTTCTGGGAAAGA
Matches = 12
Score = 7
NTNGCNNCTTNTGGGAA
est. tm = 12.9 oC
DeltaG @37 degrees
= -4.17 kcal/mole
5'-TTAGCTGCTTCTGGGAAAGA-3'
x|x||xx|||x||||||
3'-ATCTACCGTTGAAAACCCTT-5'
GATA62F03N-F
TTCCCAAAAGTTGCCATCTA versus ATA59H06Z-R CTACTGCTGGGAATACCAGA
Matches = 10
Score = 7
CNACTNNTGGGAA
est. tm = 5.4 oC
DeltaG @37 degrees
= -3.33 kcal/mole
5'-CTACTGCTGGGAATACCAGA-3'
|x|||xx||||||
3'-ATCTACCGTTGAAAACCCTT-5'
GATA62F03N-F
TTCCCAAAAGTTGCCATCTA versus GATA116B01N-F ATGGCCTATTGTGGGATCTT
Matches = 12
Score = 7
ATGGCNNNTTNTGGGAN
est. tm = 24.5 oC
DeltaG @37 degrees
= -6.43 kcal/mole
5'-ATGGCCTATTGTGGGATCTT-3'
|||||xxx||x|||||x
3'-ATCTACCGTTGAAAACCCTT-5'
GATA62F03N-F
TTCCCAAAAGTTGCCATCTA versus GATA8C04-F AGACCCTGTCTCAGATAGATGG
Matches = 7
Score = 7
CCATCTA
est. tm = 0.3 oC
DeltaG @37 degrees
= -3.39 kcal/mole
3'-GGTAGATAGACTCTGTCCCAGA-5'
|||||||
5'-TTCCCAAAAGTTGCCATCTA-3'
GATA62F03N-F
TTCCCAAAAGTTGCCATCTA versus ATA7D07-R ACGGGAGCTTTTGAGAAGTT
Matches = 13
Score = 9
ANGGNANCTTTTGNGAA
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.51 kcal/mole
5'-ACGGGAGCTTTTGAGAAGTT-3'
|x||x|x||||||x|||
3'-ATCTACCGTTGAAAACCCTT-5'
AGAT142-F
ATCCCATGCTCTGGTGCTAC versus GATA27-F AAGTGTTGCATCAGAGCCTC
Matches = 12
Score = 8
NANGCTCTGNTGCNAC
est. tm = 20.7 oC
DeltaG @37 degrees
= -5.65 kcal/mole
3'-CTCCGAGACTACGTTGTGAA-5'
x|x||||||x|||x||
5'-ATCCCATGCTCTGGTGCTAC-3'
AGAT142-F
ATCCCATGCTCTGGTGCTAC versus GATA175D03-R CAGGAGTATGGGATCACCAG
Matches = 11
Score = 8
CNNGAGNATGGGAT
est. tm = 9.8 oC
DeltaG @37 degrees
= -3.64 kcal/mole
5'-CAGGAGTATGGGATCACCAG-3'
|xx|||x|||||||
3'-CATCGTGGTCTCGTACCCTA-5'
AGAT142-F
ATCCCATGCTCTGGTGCTAC versus ATT070-R GGCAGTAGAGCCAGACCTTG
Matches = 12
Score = 8
CANGNTCTGGNNCTAC
est. tm = 6.9 oC
DeltaG @37 degrees
= -2.64 kcal/mole
3'-GTTCCAGACCGAGATGACGG-5'
||x|x|||||xx||||
5'-ATCCCATGCTCTGGTGCTAC-3'
GATA5E06-F
GTGCACCTCTACACCCAGAC versus GATA12F04-F AGCCATCTGGGCTTAGAGAT
Matches = 12
Score = 8
ANCTCTANNCCCAGAN
est. tm = 20.2 oC
DeltaG @37 degrees
= -5.47 kcal/mole
3'-TAGAGATTCGGGTCTACCGA-5'
|x|||||xx||||||x
5'-GTGCACCTCTACACCCAGAC-3'
GATA5E06-F
GTGCACCTCTACACCCAGAC versus GATA175D03-F TGGAGTCTCTGGGTGAAGAG
Matches = 12
Score = 10
CTCTNCACCCAGAN
est. tm = 36.4 oC
DeltaG @37 degrees
= -9.21 kcal/mole
3'-GAGAAGTGGGTCTCTGAGGT-5'
||||x||||||||x
5'-GTGCACCTCTACACCCAGAC-3'
GATA5E06-F
GTGCACCTCTACACCCAGAC versus GATA11E02N-R AGTGCTAGACTGGGAGAAGA
Matches = 10
Score = 7
TCTNCNCCCAGNC
est. tm = less than zero
DeltaG @37 degrees
= -2.15 kcal/mole
3'-AGAAGAGGGTCAGATCGTGA-5'
|||x|x|||||x|
5'-GTGCACCTCTACACCCAGAC-3'
GATA73H09N-R
ATATTTCAGAACCGCAGCAG versus GATA89A11-F GCTTCTGAAAGCTTCTAGTTTACC
Matches = 10
Score = 7
GNTTCTGAAANNT
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.57 kcal/mole
5'-GCTTCTGAAAGCTTCTAGTTTACC-3'
|x||||||||xx|
3'-GACGACGCCAAGACTTTATA-5'
GATA81D05-R
CTCAAGTCCCAAAAATGAGG versus GATA81C04-F TAGGATTTGAGACAAATGAAAGC
Matches = 9
Score = 7
TNGGANTTGAG
est. tm = less than 0 oC
DeltaG @37 degrees
= -2.33 kcal/mole
5'-TAGGATTTGAGACAAATGAAAGC-3'
|x|||x|||||
3'-GGAGTAAAAACCCTGAACTC-5'
GATG011-F
CTCAAAGCCTGTGGAGGTCT versus GATA81C04-F TAGGATTTGAGACAAATGAAAGC
Matches = 9
Score = 7
NAGGNTTTGAG
est. tm = 11.1 oC
DeltaG @37 degrees
= -4.34 kcal/mole
5'-TAGGATTTGAGACAAATGAAAGC-3'
x|||x||||||
3'-TCTGGAGGTGTCCGAAACTC-5'
ATA4E02-R
CTGCTTTGGGTTTCACTTGT versus GATA81C04-F TAGGATTTGAGACAAATGAAAGC
Matches = 10
Score = 8
GNTTTCANTTGT
est. tm = 2.3 oC
DeltaG @37 degrees
= -2.56 kcal/mole
3'-CGAAAGTAAACAGAGTTTAGGAT-5'
|x|||||x||||
5'-CTGCTTTGGGTTTCACTTGT-3'
sRA-R
CCTTGTCAGCGTTTATTTGCC versus GATA81C04-F TAGGATTTGAGACAAATGAAAGC
Matches = 10
Score = 7
GCNTTNATTTGNC
est. tm = less than zero
DeltaG @37 degrees
= -0.81 kcal/mole
3'-CGAAAGTAAACAGAGTTTAGGAT-5'
||x||x|||||x|
5'-CCTTGTCAGCGTTTATTTGCC-3'
GATA31-R
TCATGTGAGCCAATTCCTCT versus GATA81C04-F TAGGATTTGAGACAAATGAAAGC
Matches = 13
Score = 7
NAGGANTTGNNNCANATGA
est. tm = 11.4 oC
DeltaG @37 degrees
= -3.24 kcal/mole
5'-TAGGATTTGAGACAAATGAAAGC-3'
x||||x|||xxx||x||||
3'-TCTCCTTAACCGAGTGTACT-5'
GATA11C08-R
GGCTGCAGTTAGCTGTCATT versus GATA81C04-F TAGGATTTGAGACAAATGAAAGC
Matches = 8
Score = 7
GCTNTCATT
est. tm = 1.0 oC
DeltaG @37 degrees
= -3.25 kcal/mole
3'-CGAAAGTAAACAGAGTTTAGGAT-5'
|||x|||||
5'-GGCTGCAGTTAGCTGTCATT-3'
GATA27-F
AAGTGTTGCATCAGAGCCTC versus ATA59H06Z-F AAAGCGAGACTCTGTCTCAA
Matches = 11
Score = 7
TTGNNNCAGAGNCTC
est. tm = 5.9 oC
DeltaG @37 degrees
= -2.61 kcal/mole
3'-AACTCTGTCTCAGAGCGAAA-5'
|||xxx|||||x|||
5'-AAGTGTTGCATCAGAGCCTC-3'
GATA27-F
AAGTGTTGCATCAGAGCCTC versus ATA34E08N-F TGCACCACTTCATATTTCCA
Matches = 9
Score = 8
TGCANCACTT
est. tm = 14.4 oC
DeltaG @37 degrees
= -5.09 kcal/mole
5'-TGCACCACTTCATATTTCCA-3'
||||x|||||
3'-CTCCGAGACTACGTTGTGAA-5'
GATA27-F
AAGTGTTGCATCAGAGCCTC versus ATA24A08-F GCAGCACTTGGCAAATACTC
Matches = 8
Score = 7
GCANCACTT
est. tm = 5.7 oC
DeltaG @37 degrees
= -3.98 kcal/mole
5'-GCAGCACTTGGCAAATACTC-3'
|||x|||||
3'-CTCCGAGACTACGTTGTGAA-5'
GATA27-F
AAGTGTTGCATCAGAGCCTC versus GATA27A12-F GTGGCTTTGGAGGAACACTA
Matches = 14
Score = 8
GNGGCTNTGNNGNAACACTN
est. tm = 19.0 oC
DeltaG @37 degrees
= -4.88 kcal/mole
5'-GTGGCTTTGGAGGAACACTA-3'
|x||||x||xx|x||||||x
3'-CTCCGAGACTACGTTGTGAA-5'
GATA27-F
AAGTGTTGCATCAGAGCCTC versus GATA27A12-F GTGGCTTTGGAGGAACACTA
Matches = 14
Score = 8
NAGTGTTNCNNCANAGCCNC
est. tm = 17.4 oC
DeltaG @37 degrees
= -4.48 kcal/mole
3'-ATCACAAGGAGGTTTCGGTG-5'
x||||||x|xx||x||||x|
5'-AAGTGTTGCATCAGAGCCTC-3'
GATA27-F
AAGTGTTGCATCAGAGCCTC versus GATA84E11-F TGTTGGAAGACTTCTCAGCC
Matches = 10
Score = 7
TGNTGNAANACTT
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.77 kcal/mole
5'-TGTTGGAAGACTTCTCAGCC-3'
||x||x||x||||
3'-CTCCGAGACTACGTTGTGAA-5'
GATA27-F
AAGTGTTGCATCAGAGCCTC versus GGAT3F08-F TTTTCCAGAAGCTCAGATCC
Matches = 10
Score = 7
GNATCNGAGCNTC
est. tm = less than zero
DeltaG @37 degrees
= -1.54 kcal/mole
3'-CCTAGACTCGAAGACCTTTT-5'
|x|||x||||x||
5'-AAGTGTTGCATCAGAGCCTC-3'
GATA68F07-F
ATTGCTTCCCCTTTACCTGA versus GATA64G07-F TTTCCTAGTAGCTCAAGTAAAGAGG
Matches = 11
Score = 9
CCNCTTTACNTGA
est. tm = 9.7 oC
DeltaG @37 degrees
= -3.51 kcal/mole
3'-GGAGAAATGAACTCGATGATCCTTT-5'
||x||||||x|||
5'-ATTGCTTCCCCTTTACCTGA-3'
GATA73E11-F
TTGGTGGTGTCATCCTCTTT versus GATA64G07-F TTTCCTAGTAGCTCAAGTAAAGAGG
Matches = 7
Score = 7
CCTCTTT
est. tm = 2.9 oC
DeltaG @37 degrees
= -3.78 kcal/mole
3'-GGAGAAATGAACTCGATGATCCTTT-5'
|||||||
5'-TTGGTGGTGTCATCCTCTTT-3'
GGAA19H07-R
GCCAAGCACTCTTTTCTTCA versus GATA64G07-F TTTCCTAGTAGCTCAAGTAAAGAGG
Matches = 10
Score = 7
NCTCTTTNCTTNA
est. tm = less than zero
DeltaG @37 degrees
= -2.33 kcal/mole
3'-GGAGAAATGAACTCGATGATCCTTT-5'
x||||||x|||x|
5'-GCCAAGCACTCTTTTCTTCA-3'
GATA88F09-F
TACTTGGGATGCTAAGGTGG versus AGAT060-R TACCATGCCAAGGACATCAA
Matches = 11
Score = 8
TANCATNCCAAGNA
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.32 kcal/mole
5'-TACCATGCCAAGGACATCAA-3'
||x|||x|||||x|
3'-GGTGGAATCGTAGGGTTCAT-5'
GATA88F09-F
TACTTGGGATGCTAAGGTGG versus ATA12D05-R CACCTCAGCCTCTTTGGTAG
Matches = 13
Score = 7
CACCTNAGCNTCNNNNGTA
est. tm = 11.5 oC
DeltaG @37 degrees
= -3.16 kcal/mole
5'-CACCTCAGCCTCTTTGGTAG-3'
|||||x|||x||xxxx|||
3'-GGTGGAATCGTAGGGTTCAT-5'
GATA88F09-F
TACTTGGGATGCTAAGGTGG versus ATA45G06-R GCCTCTTGTCATCCCAAGTA
Matches = 15
Score = 10
NCNNCTTNNCATCCCAAGTA
est. tm = 28.4 oC
DeltaG @37 degrees
= -6.76 kcal/mole
5'-GCCTCTTGTCATCCCAAGTA-3'
x|xx|||xx|||||||||||
3'-GGTGGAATCGTAGGGTTCAT-5'
GATA88F09-F
TACTTGGGATGCTAAGGTGG versus ATA45G06-R GCCTCTTGTCATCCCAAGTA
Matches = 15
Score = 10
TACTTGGGATGNNAAGNNGN
est. tm = 29.7 oC
DeltaG @37 degrees
= -7.16 kcal/mole
3'-ATGAACCCTACTGTTCTCCG-5'
|||||||||||xx|||xx|x
5'-TACTTGGGATGCTAAGGTGG-3'
GATA88F09-F
TACTTGGGATGCTAAGGTGG versus GATG011-R CCACCACGGTATCATCCAAT
Matches = 12
Score = 7
NTNGGATGNTANNGTGG
est. tm = 8.3 oC
DeltaG @37 degrees
= -3.06 kcal/mole
3'-TAACCTACTATGGCACCACC-5'
x|x|||||x||xx||||
5'-TACTTGGGATGCTAAGGTGG-3'
ATA31G11N-F
GCTCCTGCGTACTGAGATA versus ATA29C07-R CCAGTACGCAGATGGTCCTA
Matches = 11
Score = 7
NCAGTACGCAGNNGN
est. tm = 31.4 oC
DeltaG @37 degrees
= -7.97 kcal/mole
5'-CCAGTACGCAGATGGTCCTA-3'
x||||||||||xx|x
3'-ATAGAGTCATGCGTCCTCG-5'
ATA31G11N-F
GCTCCTGCGTACTGAGATA versus ATA4E02-F TACTCAGGAGGCAGAGATGG
Matches = 9
Score = 7
TACNCAGGAGN
est. tm = 12.0 oC
DeltaG @37 degrees
= -4.70 kcal/mole
5'-TACTCAGGAGGCAGAGATGG-3'
|||x||||||x
3'-ATAGAGTCATGCGTCCTCG-5'
ATA31G11N-F
GCTCCTGCGTACTGAGATA versus ATTT030-F GGGTCCATTAGTTGAGTATGCAG
Matches = 11
Score = 7
CTGCNTACTNANNTA
est. tm = less than zero
DeltaG @37 degrees
= -1.09 kcal/mole
3'-GACGTATGAGTTGATTACCTGGG-5'
||||x||||x|xx||
5'-GCTCCTGCGTACTGAGATA-3'
UT1772-F
ATGAGGCTGGCAGACTCG versus GATA70E11-F GGCAGCCTAATAGTTCCGAT
Matches = 9
Score = 7
GNCAGCCTNAT
est. tm = less than 0 oC
DeltaG @37 degrees
= -3.07 kcal/mole
5'-GGCAGCCTAATAGTTCCGAT-3'
|x||||||x||
3'-GCTCAGACGGTCGGAGTA-5'
GATA70E11-F
GGCAGCCTAATAGTTCCGAT versus GATA188F04-F AACAGAACCAATAGGCTATCTATC
Matches = 14
Score = 8
ANCNGAACNANTAGGCTNNC
est. tm = less than 0 oC
DeltaG @37 degrees
= -0.99 kcal/mole
5'-AACAGAACCAATAGGCTATCTATC-3'
|x|x||||x|x||||||xx|
3'-TAGCCTTGATAATCCGACGG-5'
GATA70E11-F
GGCAGCCTAATAGTTCCGAT versus GATA25A04-R GTGCATTATGGGGACCATTA
Matches = 10
Score = 7
TAATNGTNCCNAT
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-ATTACCAGGGGTATTACGTG-5'
||||x||x||x||
5'-GGCAGCCTAATAGTTCCGAT-3'
ATA5A04N-F
TGCCACTGACTTCATTGCTA versus GATA52B03-F GAGCAATGATCTCATTTGCA
Matches = 15
Score = 10
NAGCAATGANNTCANTNGCA
est. tm = 30.4 oC
DeltaG @37 degrees
= -7.45 kcal/mole
5'-GAGCAATGATCTCATTTGCA-3'
x||||||||xx|||x|x|||
3'-ATCGTTACTTCAGTCACCGT-5'
ATA5A04N-F
TGCCACTGACTTCATTGCTA versus GATA52B03-F GAGCAATGATCTCATTTGCA
Matches = 15
Score = 10
TGCNANTGANNTCATTGCTN
est. tm = 31.8 oC
DeltaG @37 degrees
= -7.85 kcal/mole
3'-ACGTTTACTCTAGTAACGAG-5'
|||x|x|||xx||||||||x
5'-TGCCACTGACTTCATTGCTA-3'
ATA5A04N-F
TGCCACTGACTTCATTGCTA versus GATA193A07-R AGCCTGTGGCATCTTGTTAG
Matches = 9
Score = 7
AGNCNGTGGCA
est. tm = 3.1 oC
DeltaG @37 degrees
= -3.77 kcal/mole
5'-AGCCTGTGGCATCTTGTTAG-3'
||x|x||||||
3'-ATCGTTACTTCAGTCACCGT-5'
ATA24F10-F
TCCTTTGTCAGTCATGCTCA versus GATA70E11-R AGTTTGCAGTGAGCATGGTT
Matches = 9
Score = 7
ANNCATGCTCA
est. tm = 9.2 oC
DeltaG @37 degrees
= -4.13 kcal/mole
3'-TTGGTACGAGTGACGTTTGA-5'
|xx||||||||
5'-TCCTTTGTCAGTCATGCTCA-3'
ATA24F10-F
TCCTTTGTCAGTCATGCTCA versus GATA21D04-F TAGGTTCTGGGCATGTCTGT
Matches = 10
Score = 7
NCAGNCATGCNCA
est. tm = 11.2 oC
DeltaG @37 degrees
= -4.34 kcal/mole
3'-TGTCTGTACGGGTCTTGGAT-5'
x|||x|||||x||
5'-TCCTTTGTCAGTCATGCTCA-3'
GATA49C09N-F
GCAACAGAGCAAGACTGTC versus ATA24F10-F TCCTTTGTCAGTCATGCTCA
Matches = 11
Score = 8
NGAGCANGACTGNC
est. tm = 20.6 oC
DeltaG @37 degrees
= -5.70 kcal/mole
3'-ACTCGTACTGACTGTTTCCT-5'
x|||||x|||||x|
5'-GCAACAGAGCAAGACTGTC-3'
ATA24F10-F
TCCTTTGTCAGTCATGCTCA versus GATA165G02N-R CTGTCACAGGACTTTTCAGCC
Matches = 9
Score = 7
CTGNCANAGGA
est. tm = less than 0 oC
DeltaG @37 degrees
= -2.74 kcal/mole
5'-CTGTCACAGGACTTTTCAGCC-3'
|||x||x||||
3'-ACTCGTACTGACTGTTTCCT-5'
UT721-F
TTGGTCTCCTCTGATGGGT versus GATA87G01-F CAGTGGACACTAAACACAATCC
Matches = 10
Score = 7
CAGNGGANACNAA
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.50 kcal/mole
5'-CAGTGGACACTAAACACAATCC-3'
|||x|||x||x||
3'-TGGGTAGTCTCCTCTGGTT-5'
GATA31D10-F
GTGGGACCTTGTGATTGTGT versus GATA87G01-F CAGTGGACACTAAACACAATCC
Matches = 8
Score = 7
NGATTGTGT
est. tm = 14.3 oC
DeltaG @37 degrees
= -5.07 kcal/mole
3'-CCTAACACAAATCACAGGTGAC-5'
x||||||||
5'-GTGGGACCTTGTGATTGTGT-3'
ATA33B03Z-R
TAGTATCCACTTCCTGGGGT versus GATA87G01-F CAGTGGACACTAAACACAATCC
Matches = 10
Score = 8
NAGTGGANACTA
est. tm = 18.4 oC
DeltaG @37 degrees
= -5.47 kcal/mole
5'-CAGTGGACACTAAACACAATCC-3'
x||||||x||||
3'-TGGGGTCCTTCACCTATGAT-5'
GATA63F09-R
CTGTCTAGTGTCCTGAGCTGC versus GATA87G01-F CAGTGGACACTAAACACAATCC
Matches = 12
Score = 7
CNNNGGACACTANACAN
est. tm = 19.0 oC
DeltaG @37 degrees
= -4.95 kcal/mole
5'-CAGTGGACACTAAACACAATCC-3'
|xxx||||||||x|||x
3'-CGTCGAGTCCTGTGATCTGTC-5'
GATA145D10N-R
TTGAGCCCAGAAGTTTGAG versus GATA115E01N-F CCTCCTAGCTCCTCAAGCTT
Matches = 8
Score = 7
AAGNTTGAG
est. tm = less than zero
DeltaG @37 degrees
= -2.45 kcal/mole
3'-TTCGAACTCCTCGATCCTCC-5'
|||x|||||
5'-TTGAGCCCAGAAGTTTGAG-3'
GATA115E01N-F
CCTCCTAGCTCCTCAAGCTT versus MFD455-AAT052-R GATGAGCCAGGAAGCCATAA
Matches = 11
Score = 8
GANGAGCNAGGANG
est. tm = 7.9 oC
DeltaG @37 degrees
= -3.50 kcal/mole
5'-GATGAGCCAGGAAGCCATAA-3'
||x||||x||||x|
3'-TTCGAACTCCTCGATCCTCC-5'
GATA72G11N-R
CAAAATTAGCTGGGTATTGTCTAG versus GATA64A09-F CCCTAGCTAATGTTAAAATATCACG
Matches = 11
Score = 7
NCCNAGCTAATNTTN
est. tm = 15.5 oC
DeltaG @37 degrees
= -4.71 kcal/mole
5'-CCCTAGCTAATGTTAAAATATCACG-3'
x||x|||||||x||x
3'-GATCTGTTATGGGTCGATTAAAAC-5'
GATA64A09-F
CCCTAGCTAATGTTAAAATATCACG versus GATA124E07-R ATATTCTTATATTCCATATGGCACA
Matches = 14
Score = 7
ATATTNTNANATTNNNTANGG
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-ATATTCTTATATTCCATATGGCACA-3'
|||||x|x|x|||xxx||x||
3'-GCACTATAAAATTGTAATCGATCCC-5'
GATA64A09-F CCCTAGCTAATGTTAAAATATCACG
versus GATA138B05-F TGGAAATCTTAAGAATATCTAGGTG
Matches = 16
Score = 8
NNGANATNTTAANANTANCTAGGN
est. tm = 4.8 oC
DeltaG @37 degrees
= -0.85 kcal/mole
5'-TGGAAATCTTAAGAATATCTAGGTG-3'
xx||x||x||||x|x||x|||||x
3'-GCACTATAAAATTGTAATCGATCCC-5'
GATA64D03-F
ACATTTCCAAGGGCTACACA versus GATA64A09-F CCCTAGCTAATGTTAAAATATCACG
Matches = 10
Score = 7
CCCTNGNNAATGT
est. tm = 2.7 oC
DeltaG @37 degrees
= -2.89 kcal/mole
5'-CCCTAGCTAATGTTAAAATATCACG-3'
||||x|xx|||||
3'-ACACATCGGGAACCTTTACA-5'
GATA48D07-R
TGTAACAAGGGCTATGGGAA versus GATA64A09-F CCCTAGCTAATGTTAAAATATCACG
Matches = 12
Score = 7
CCNTAGCNNNTGTTANA
est. tm = 2.0 oC
DeltaG @37 degrees
= -1.68 kcal/mole
5'-CCCTAGCTAATGTTAAAATATCACG-3'
||x||||xxx|||||x|
3'-AAGGGTATCGGGAACAATGT-5'
ATA29C03-F
GACTCTGCTAAGCACATTTCC versus GATA28D01-R TTTGAAGATCTGTGAAATGTGC
Matches = 9
Score = 8
GCACATTTCN
est. tm = 26.5 oC
DeltaG @37 degrees
= -7.04 kcal/mole
3'-CGTGTAAAGTGTCTAGAAGTTT-5'
|||||||||x
5'-GACTCTGCTAAGCACATTTCC-3'
ATA29C03-F
GACTCTGCTAAGCACATTTCC versus ATA21A03-F TGCTTACCATAATCAACATTGA
Matches = 11
Score = 8
TGCTTANCANANTC
est. tm = 0.9 oC
DeltaG @37 degrees
= -2.23 kcal/mole
5'-TGCTTACCATAATCAACATTGA-3'
||||||x||x|x||
3'-CCTTTACACGAATCGTCTCAG-5'
UT1772-F
ATGAGGCTGGCAGACTCG versus ATA29C03-F GACTCTGCTAAGCACATTTCC
Matches = 12
Score = 7
GANTCTGCNANNCNCAT
est. tm = less than 0 oC
DeltaG @37 degrees
= -1.16 kcal/mole
5'-GACTCTGCTAAGCACATTTCC-3'
||x|||||x|xx|x|||
3'-GCTCAGACGGTCGGAGTA-5'
ATGT006Z-R
CTGCACAGCAGAGTGAGACC versus ATA29C03-F GACTCTGCTAAGCACATTTCC
Matches = 11
Score = 7
NACTCTGCTNNGCAN
est. tm = 33.8 oC
DeltaG @37 degrees
= -8.59 kcal/mole
5'-GACTCTGCTAAGCACATTTCC-3'
x||||||||xx|||x
3'-CCAGAGTGAGACGACACGTC-5'
GGAA23C05N-F
GGAATAAGTGCAGTGCTTGG versus ATA31G11N-R GCACAGTACTTCTCCCTCCA
Matches = 12
Score = 8
GCACNGNACTTNTNCC
est. tm = 4.5 oC
DeltaG @37 degrees
= -2.69 kcal/mole
5'-GCACAGTACTTCTCCCTCCA-3'
||||x|x||||x|x||
3'-GGTTCGTGACGTGAATAAGG-5'
GGAA23C05N-F
GGAATAAGTGCAGTGCTTGG versus GAAT1A4N-R CCCAAGGGCAGAAATTATTA
Matches = 13
Score = 7
NAATAANTNCNGNNCTTGG
est. tm = less than zero
DeltaG @37 degrees
= -0.37 kcal/mole
3'-ATTATTAAAGACGGGAACCC-5'
x|||||x|x|x|xx|||||
5'-GGAATAAGTGCAGTGCTTGG-3'
GGAA17G05-F
GGGTGACAGAGCAAAATTCT versus GATA7C06-R TAGGATTTTACTATATTCCCCAGG
Matches = 14
Score = 8
AGNATTTTNCTNTNTNNCCC
est. tm = less than zero
DeltaG @37 degrees
= -0.12 kcal/mole
5'-TAGGATTTTACTATATTCCCCAGG-3'
||x|||||x||x|x|xx|||
3'-TCTTAAAACGAGACAGTGGG-5'
GATA23F06-F
TACATGGCAGCAGGCATATA versus GATA23F06-F TACATGGCAGCAGGCATATA
Matches = 14
Score = 8
TANATGNCNGCNGNCATNTA
est. tm = less than 0 oC
DeltaG @37 degrees
= > 0 kcal/mole
5'-TACATGGCAGCAGGCATATA-3'
||x|||x|x||x|x|||x||
3'-ATATACGGACGACGGTACAT-5'
GATA23F06-F
TACATGGCAGCAGGCATATA versus GATA23F06-F TACATGGCAGCAGGCATATA
Matches = 14
Score = 8
TANATGNCNGCNGNCATNTA
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-ATATACGGACGACGGTACAT-5'
||x|||x|x||x|x|||x||
5'-TACATGGCAGCAGGCATATA-3'
GATA23F06-F
TACATGGCAGCAGGCATATA versus ATCC001-F TGCCCTGTATTCTGTGTAGCA
Matches = 8
Score = 7
TGCCNTGTA
est. tm = 4.4 oC
DeltaG @37 degrees
= -4.04 kcal/mole
5'-TGCCCTGTATTCTGTGTAGCA-3'
||||x||||
3'-ATATACGGACGACGGTACAT-5'
ATA34E08N-F
TGCACCACTTCATATTTCCA versus GATA23F05-F ATGGTATTAGGAGATGGGGC
Matches = 13
Score = 7
GCNCCANNTCNTANTNCCA
est. tm = less than zero
DeltaG @37 degrees
= -0.97 kcal/mole
3'-CGGGGTAGAGGATTATGGTA-5'
||x|||xx||x||x|x|||
5'-TGCACCACTTCATATTTCCA-3'
ATA34E08N-F
TGCACCACTTCATATTTCCA versus AGAT144-R ATCCCAGATGGAAACATGGA
Matches = 10
Score = 8
TNCATNTTTCCA
est. tm = 1.2 oC
DeltaG @37 degrees
= -2.73 kcal/mole
3'-AGGTACAAAGGTAGACCCTA-5'
|x|||x||||||
5'-TGCACCACTTCATATTTCCA-3'
GATA30D09N-R
AGCCTCTGTGCAGATCCTC versus ATA1B07-F GGACAGATGCTTCCAGAAAA
Matches = 9
Score = 7
GNACAGANGCT
est. tm = 0.9 oC
DeltaG @37 degrees
= -3.14 kcal/mole
5'-GGACAGATGCTTCCAGAAAA-3'
|x|||||x|||
3'-CTCCTAGACGTGTCTCCGA-5'
ATA1B07-F
GGACAGATGCTTCCAGAAAA versus GATA11C06N-R AGCGTTTGTGTGTGCATCTGT
Matches = 13
Score = 8
ACAGATGCNNNCANAAAN
est. tm = 23.8 oC
DeltaG @37 degrees
= -5.87 kcal/mole
3'-TGTCTACGTGTGTGTTTGCGA-5'
||||||||xxx||x|||x
5'-GGACAGATGCTTCCAGAAAA-3'
ATA9B04N-F
ACCCGTAATCTGTCTCTCCC versus GATA23F08-R TATATTTCTTGGGAAAGATAGATGG
Matches = 11
Score = 7
NNATCTNTCTNTCCC
est. tm = 13.3 oC
DeltaG @37 degrees
= -4.26 kcal/mole
3'-GGTAGATAGAAAGGGTTCTTTATAT-5'
xx||||x|||x||||
5'-ACCCGTAATCTGTCTCTCCC-3'
ATA9B04N-F
ACCCGTAATCTGTCTCTCCC versus GGAA22G01-F ACAAAAGCTGGCAAAGACAG
Matches = 9
Score = 7
CTGTCTNTNCC
est. tm = less than zero
DeltaG @37 degrees
= -2.80 kcal/mole
3'-GACAGAAACGGTCGAAAACA-5'
||||||x|x||
5'-ACCCGTAATCTGTCTCTCCC-3'
ATA9B04N-F
ACCCGTAATCTGTCTCTCCC versus GATA63A03N-F GTGGATAGACACATGACAGATAGG
Matches = 14
Score = 8
NGGANAGACANATNACNGNT
est. tm = 2.8 oC
DeltaG @37 degrees
= -1.93 kcal/mole
5'-GTGGATAGACACATGACAGATAGG-3'
x|||x|||||x||x||x|x|
3'-CCCTCTCTGTCTAATGCCCA-5'
ATA9B04N-F
ACCCGTAATCTGTCTCTCCC versus MFD466-TTA001-R GCCTGGGCAAAGAGAGAGTA
Matches = 11
Score = 7
TANTCTNTCTNTNCC
est. tm = less than zero
DeltaG @37 degrees
= greater than zero
3'-ATGAGAGAGAAACGGGTCCG-5'
||x|||x|||x|x||
5'-ACCCGTAATCTGTCTCTCCC-3'
GATA12F04-F
AGCCATCTGGGCTTAGAGAT versus TTTA028-R GGCACCTTTAATCCCAGCTA
Matches = 12
Score = 7
NANCTGGGNTTANAGNT
est. tm = less than zero
DeltaG @37 degrees
= -1.49 kcal/mole
3'-ATCGACCCTAATTTCCACGG-5'
x|x|||||x|||x||x|
5'-AGCCATCTGGGCTTAGAGAT-3'
GATA12F04-F
AGCCATCTGGGCTTAGAGAT versus GATA134B03-R GCTGCTTCCCTAAACCTAGA
Matches = 11
Score = 7
TCTNGGNTTAGNGAN
est. tm = less than zero
DeltaG @37 degrees
= -2.19 kcal/mole
3'-AGATCCAAATCCCTTCGTCG-5'
|||x||x||||x||x
5'-AGCCATCTGGGCTTAGAGAT-3'
GATA12F04-F
AGCCATCTGGGCTTAGAGAT versus AGAT144-R ATCCCAGATGGAAACATGGA
Matches = 10
Score = 7
ANCCCAGATGGNN
est. tm = 22.6 oC
DeltaG @37 degrees
= -6.39 kcal/mole
5'-ATCCCAGATGGAAACATGGA-3'
|x|||||||||xx
3'-TAGAGATTCGGGTCTACCGA-5'
GATA90D07N-F
CTGAGGTGGGAGGATCAGTT versus AATA058-F CCCATCTCAGGAAGGGAAAC
Matches = 9
Score = 8
CCCANCTCAG
est. tm = 16.1 oC
DeltaG @37 degrees
= -5.31 kcal/mole
5'-CCCATCTCAGGAAGGGAAAC-3'
||||x|||||
3'-TTGACTAGGAGGGTGGAGTC-5'
GATA90D07N-F
CTGAGGTGGGAGGATCAGTT versus ATA12D05-R CACCTCAGCCTCTTTGGTAG
Matches = 8
Score = 8
CACCTCAG
est. tm = 19.2 oC
DeltaG @37 degrees
= -5.90 kcal/mole
5'-CACCTCAGCCTCTTTGGTAG-3'
||||||||
3'-TTGACTAGGAGGGTGGAGTC-5'
GATA12F04-R
TATAGGCACATGCCACTGTG versus GATA28D01-F AGTAGAGAACAAAACACTGTGGC
Matches = 8
Score = 7
GCCACNGTG
est. tm = 12.6 oC
DeltaG @37 degrees
= -5.02 kcal/mole
3'-CGGTGTCACAAAACAAGAGATGA-5'
|||||x|||
5'-TATAGGCACATGCCACTGTG-3'
GATA28D01-F
AGTAGAGAACAAAACACTGTGGC versus GGAA3C07-R TTCTCTACATATTTACTGCCAACA
Matches = 8
Score = 7
TTCTCTACN
est. tm = 12.0 oC
DeltaG @37 degrees
= -4.70 kcal/mole
5'-TTCTCTACATATTTACTGCCAACA-3'
||||||||x
3'-CGGTGTCACAAAACAAG