STR Fact Sheet--CSF1PO

CSF1PO

Other Names	Chromosomal Location	GenBank Accession
CSF	5q33.3-34; human c-fms proto-oncogene for CSF-1 receptor gene	X14720; has 12 repeats

Repeat: [AGAT] = GenBank top strand (commonly used)

Reported Primers Ref. PCR Primer Sequences

Set 1 3 5'-AACCTGAGTCTGCCAAGGACTAGC-3' (AGAT strand)
5'-TTCCACACACCACTGGCCATCTTC-3' (TCTA strand)

Set 2 Promega GenePrint^® PowerPlex™ 1.1

Set 3 ABI AmpFlSTR^® COfiler™

PCR Product Sizes of Observed Alleles

Allele
(Repeat #)
Set 1 &
Set 2
Set 3 Repeat Structure Ref.

6 291 bp 281 bp [AGAT]₆

7 295 bp 285 bp [AGAT]₇ 153

8 299 bp 289 bp [AGAT]₈ 28

9 303 bp 293 bp [AGAT]₉ 28

9.1 302 bp 294 bp variant allele

10 307 bp 297 bp [AGAT]₁₀ 28

10.1 308 bp 298 bp variant allele

10.3 310 bp 300 bp Budowle 1998

11 311 bp 301 bp [AGAT]₁₁ 28

12 315 bp 305 bp [AGAT]₁₂ 28

12.1 316 bp 306 bp Budowle 1998

13 319 bp 309 bp [AGAT]₁₃ 28

14 323 bp 313 bp [AGAT]₁₄ 28

15 327 bp 317 bp [AGAT]₁₅ 285

16 331bp 321 bp Margolis-Nunno,H., et. al, 2001

Allelic Ladders: Commercially available from Promega and PE Applied Biosystems

Common Multiplexes: CTT, CTTV, PowerPlex (Promega), AmpFlSTR Green I, COFiler (ABI)

Original Paper

CSF1PO Population Studies

CSF1PO Reference List

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Reported Primers	Ref.	PCR Primer Sequences
Set 1	3	5'-AACCTGAGTCTGCCAAGGACTAGC-3' (AGAT strand) 5'-TTCCACACACCACTGGCCATCTTC-3' (TCTA strand)
Set 2	Promega	GenePrint^® PowerPlex™ 1.1
Set 3	ABI	AmpFlSTR^® COfiler™

Allele (Repeat #)	Set 1 & Set 2	Set 3	Repeat Structure	Ref.
6	291 bp	281 bp	[AGAT]₆
7	295 bp	285 bp	[AGAT]₇	153
8	299 bp	289 bp	[AGAT]₈	28
9	303 bp	293 bp	[AGAT]₉	28
9.1	302 bp	294 bp		*variant allele*
10	307 bp	297 bp	[AGAT]₁₀	28
10.1	308 bp	298 bp		*variant allele*
10.3	310 bp	300 bp		Budowle 1998
11	311 bp	301 bp	[AGAT]₁₁	28
12	315 bp	305 bp	[AGAT]₁₂	28
12.1	316 bp	306 bp		Budowle 1998
13	319 bp	309 bp	[AGAT]₁₃	28
14	323 bp	313 bp	[AGAT]₁₄	28
15	327 bp	317 bp	[AGAT]₁₅	285
16	331bp	321 bp		Margolis-Nunno,H., et. al, 2001